View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19722_low_12 (Length: 452)

Name: NF19722_low_12
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19722_low_12
NF19722_low_12
[»] chr5 (3 HSPs)
chr5 (16-355)||(19917682-19918022)
chr5 (25-280)||(24666384-24666639)
chr5 (290-374)||(24666711-24666795)
[»] chr8 (1 HSPs)
chr8 (32-452)||(22712206-22712622)
[»] chr2 (1 HSPs)
chr2 (25-303)||(25517689-25517967)
[»] chr7 (3 HSPs)
chr7 (135-372)||(13271685-13271922)
chr7 (45-148)||(9022825-9022928)
chr7 (324-373)||(18462830-18462879)
[»] scaffold0039 (1 HSPs)
scaffold0039 (49-374)||(48860-49185)
[»] chr4 (1 HSPs)
chr4 (71-291)||(9143685-9143905)
[»] chr3 (4 HSPs)
chr3 (231-374)||(8989823-8989966)
chr3 (234-292)||(14145153-14145211)
chr3 (365-452)||(13015750-13015837)
chr3 (29-124)||(14689963-14690058)
[»] chr6 (2 HSPs)
chr6 (85-148)||(11744083-11744146)
chr6 (25-100)||(16146020-16146095)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 19918022 - 19917682
Alignment:
Q  16 gaatccccccatgtttttggcactcttgacaccctttt-gcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagca 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  19918022 gaatccccccatgtttttggcactcttgacaccctttttgcgaactcaatgcggtctttcaacatggatggccaatacaagccttgtcgaaatattagca 19917923  T
Q  115 atttcattttatgtcatgcctgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaat 214  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19917922 atatcattttatgtcatgcctgatgagaaccgcaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaat 19917823  T
Q  215 actttcgacaattttcttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttaggg 314  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  19917822 accttcgacagttttcttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactacgcctgatggattcttaggg 19917723  T
Q  315 cactctacgattggttttctccaatcattatctgacaaatt 355  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19917722 cactctacgattggttttctccaatcattatctgacaaatt 19917682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 24666384 - 24666639
Alignment:
Q  25 catgtttttggcactcttgacacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcatttt 124  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| || |||||| |||||||| |||||||| |||||||||| ||||| | ||||||||||    
T  24666384 catgtttctggcactcttggcacccttttgcaaactcaatgcagtctttcaaaatggatggccaatacaacccttgtcgaagtattaaccatttcatttt 24666483  T
Q  125 atgtcatgcctgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgaca 224  Q
    ||| | ||| ||||||||| ||||| | |||| |||||||| ||||||  |||  |||||||||||||| ||||||||  |||||||||    ||| |||    
T  24666484 atgacctgcttgatgagaatcacaagccccactatgtaccctagaaacatctacgtaagcctcattttccttgatgcacgtaagtaaaacctcttcaaca 24666583  T
Q  225 attttcttaaacaactcatttccaatgatcacatagcttaaggctctatatctagt 280  Q
     ||||||||||||| ||| ||| ||||||||||||| ||||||||||||| |||||    
T  24666584 gttttcttaaacaattcagttcaaatgatcacatagattaaggctctatagctagt 24666639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 24666711 - 24666795
Alignment:
Q  290 aactgcgcctgatgaattcttagggcactctacgattggttttctccaatcattatctgacaaattgtcaatggcaaaaatttca 374  Q
    ||||| |||||||| ||||| | || ||||||| ||||||||||||||||| |||| | | ||||||||||||||||||||||||    
T  24666711 aactgtgcctgatggattctcaaggtactctacaattggttttctccaatcgttatttaaaaaattgtcaatggcaaaaatttca 24666795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 32 - 452
Target Start/End: Complemental strand, 22712622 - 22712206
Alignment:
Q  32 ttggcactcttgacacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcat 131  Q
    |||||||||||| ||||||||| | |||||||||| || |||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||| | |    
T  22712622 ttggcactcttggcaccctttttcaaactcaatgcagtctttcaagatggatggccaatacaaaccttgtcgaaatattaaccatttcattttatgacct 22712523  T
Q  132 gcctgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttct 231  Q
    || ||||||||||||||| ||| || ||||||| |||||||||||| |||||||||||||||||| ||||||| ||| ||||| | ||   || ||||||    
T  22712522 gcttgatgagaaccacaatctcgactatgtacctcagaaacggcta-ataagcctcattttcattcatgcattcaagaaaaatgccttaagcacttttct 22712424  T
Q  232 taaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggttt 331  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| | || ||||  ||||||||||    
T  22712423 taaacagctcatttccaatgatcacatagcttaaggctctatatctagtctttcgacaaactgtgcctgatggattctcaaggtactcagcgattggttt 22712324  T
Q  332 tctccaatcattatctgacaaattgtcaatggcaaaaatttcaggataagaaaatttgggataggtgtatggttcattagagtctgattcgtcttt-tgc 430  Q
    |||||||||||||| |||||||||||||||||||||   |||| ||||||||||||||||||||| |||||| ||| |||| |||||||| ||||| | |    
T  22712323 tctccaatcattatttgacaaattgtcaatggcaaa---ttcaagataagaaaatttgggataggcgtatggctcactagaatctgattc-tctttcttc 22712228  T
Q  431 cccaacaagttttggcattgac 452  Q
    ||||| ||||||||||||||||    
T  22712227 cccaaaaagttttggcattgac 22712206  T

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Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 25517967 - 25517689
Alignment:
Q  25 catgtttttggcactcttgacacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcatttt 124  Q
    |||||| |||||||| |||| |||||||||  ||||||||||  | ||||||||| ||||| |||||||| |||||||||||||||| | ||||||||||    
T  25517967 catgttattggcacttttgatacccttttgaaaactcaatgcaatctttcaacatagatggccaatacaaaccttgtcgaaatattaaccatttcatttt 25517868  T
Q  125 atgtcatgcctgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgaca 224  Q
     || |  || | ||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||  |    
T  25517867 gtgacccgcttaatgggaaccacaagctccaccatgtaccctagaaacggctatataagcctcattttcattgatgcatttaagtaaaatgccttcggta 25517768  T
Q  225 attttcttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatg 303  Q
     ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  25517767 gttttcttaaacaattcatttccaacgatcacatagcttaaggctctatatctagtcttttgagtaactgcgcttgatg 25517689  T

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Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 135 - 372
Target Start/End: Original strand, 13271685 - 13271922
Alignment:
Q  135 tgatgagaaccacaacctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaa 234  Q
    ||||||||||||||| ||||  ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| || | ||| ||| |||||||||    
T  13271685 tgatgagaaccacaaactcctacatgtaccccagaaacaactagataagcctcattttcattgatgcatttaagtaatatgccttcaacagttttcttaa 13271784  T
Q  235 acaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggttttct 334  Q
    | || ||||| | || ||||||||| |||||| ||||||||||||||||||||| ||||| |||||||| ||||| | || |||||||||||||||||||    
T  13271785 ataattcattactaacgatcacataccttaagactctatatctagtctttcgaccaactgtgcctgatggattctcaaggtactctacgattggttttct 13271884  T
Q  335 ccaatcattatctgacaaattgtcaatggcaaaaattt 372  Q
    |||||  |||||||||||||||||||||||||||||||    
T  13271885 ccaattgttatctgacaaattgtcaatggcaaaaattt 13271922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 9022928 - 9022825
Alignment:
Q  45 cacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaac 144  Q
    ||||||||||| || ||||||| || ||| ||||||||||  |||||||| |||||||||||||||| | ||||||||||||| ||||  |||||||| |    
T  9022928 cacccttttgcaaattcaatgcagtcttttaacatggatgaccaatacaacccttgtcgaaatattaaccatttcattttatgacatgtttgatgagagc 9022829  T
Q  145 caca 148  Q
    ||||    
T  9022828 caca 9022825  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 18462879 - 18462830
Alignment:
Q  324 attggttttctccaatcattatctgacaaattgtcaatggcaaaaatttc 373  Q
    |||||||||| |||||||| |||||| ||||||||||| |||||||||||    
T  18462879 attggttttcaccaatcatcatctgataaattgtcaatagcaaaaatttc 18462830  T

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Target: scaffold0039 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 49 - 374
Target Start/End: Complemental strand, 49185 - 48860
Alignment:
Q  49 cttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccaca 148  Q
    ||||||| |||||||||  || ||||||||||||||| |||||||| ||||||| ||||||||   ||||||||||||| | ||| |||||||||  |||    
T  49185 cttttgcaaactcaatgtagtctttcaacatggatggccaatacaacccttgtcaaaatattaatcatttcattttatgacttgcttgatgagaaataca 49086  T
Q  149 acctccaccatgtaccccagaaacggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttcca 248  Q
      |||||| ||||||||||||||  ||||| ||||||| | | ||||| ||||| ||||||||||  | ||| ||  ||||||||||||| |||||||||    
T  49085 tgctccactatgtaccccagaaatagctaggtaagccttaatctcatttatgcacttaagtaaaactccttcaacggttttcttaaacaattcatttcca 48986  T
Q  249 atgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggttttctccaatcattatctg 348  Q
    |||||||||||||||| || | ||||||||||||||||| ||| || |||||| | ||||| | || | |||||||||||||||||||||||||||| ||    
T  48985 atgatcacatagcttagggttttatatctagtctttcgaataattgtgcctgacggattctcaaggtattctacgattggttttctccaatcattatttg 48886  T
Q  349 acaaattgtcaatggcaaaaatttca 374  Q
    ||||||||||||||||| || |||||    
T  48885 acaaattgtcaatggcataactttca 48860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 9143905 - 9143685
Alignment:
Q  71 tttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccacaacctccaccatgtaccccagaa 170  Q
    |||||||||  |||| |||||||| ||||||| ||||  || ||||||||||||||  | | | | ||||||||||||  |||||| | |||||||||||    
T  9143905 tttcaacatatatggccaatacaaaccttgtcaaaattgtaacaatttcattttataaccttcttaatgagaaccacatgctccactacgtaccccagaa 9143806  T
Q  171 acggctagataagcctcattttcattgatgcatttaagtaaaatactttcgacaattttcttaaacaactcatttccaatgatcacatagcttaaggctc 270  Q
    || ||||| ||||| ||||| ||||||||||||||||||||||  | ||  ||| ||||||||||||| |  |||||||||| |||||||||||||||||    
T  9143805 acagctaggtaagcttcattctcattgatgcatttaagtaaaactcctttaacagttttcttaaacaatttgtttccaatgaccacatagcttaaggctc 9143706  T
Q  271 tatatctagtctttcgactaa 291  Q
    | ||||  |||||||||||||    
T  9143705 tgtatcacgtctttcgactaa 9143685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 374
Target Start/End: Original strand, 8989823 - 8989966
Alignment:
Q  231 ttaaacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaactgcgcctgatgaattcttagggcactctacgattggtt 330  Q
    ||||||||| |||||| |||||| ||||| ||||||||||| ||  |||||||||||||||||   ||||||  ||||| | |  | |  || |||||||    
T  8989823 ttaaacaacccatttctaatgataacataacttaaggctctgtacttagtctttcgactaactattcctgattgattctcaagatatttgacaattggtt 8989922  T
Q  331 ttctccaatcattatctgacaaattgtcaatggcaaaaatttca 374  Q
    ||| ||||||||| | ||||||||| |||||| |||||||||||    
T  8989923 ttcgccaatcattgtttgacaaattatcaatgacaaaaatttca 8989966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 14145211 - 14145153
Alignment:
Q  234 aacaactcatttccaatgatcacatagcttaaggctctatatctagtctttcgactaac 292  Q
    |||||||||||| |||  |||||||||||||||||||||||| |||| |||||||||||    
T  14145211 aacaactcatttacaacaatcacatagcttaaggctctatatttagtttttcgactaac 14145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 13015750 - 13015837
Alignment:
Q  365 aaaaatttcaggataagaaaatttgggataggtgtatggttcattagagtctgattcgtcttttgccccaacaagttttggcattgac 452  Q
    ||||||||||||||||||| | ||  |||||| |||| | |||||| ||| ||||||  ||| |||||| ||||||||||||||||||    
T  13015750 aaaaatttcaggataagaataattaagataggggtatagctcattatagtgtgattctccttctgcccccacaagttttggcattgac 13015837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 14689963 - 14690058
Alignment:
Q  29 tttttggcactcttgacacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttgtcgaaatattagcaatttcatttt 124  Q
    |||||||||  |||| || ||||||||||| || |||| || ||| | ||| | ||| ||||||||||||||||||||||  ||| ||||||||||    
T  14689963 tttttggcatccttggcatccttttgcgaattctatgcagtctttgagcatagttggccaatacaagccttgtcgaaataagagccatttcatttt 14690058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 11744083 - 11744146
Alignment:
Q  85 ggcaatacaagccttgtcgaaatattagcaatttcattttatgtcatgcctgatgagaaccaca 148  Q
    ||||||||||   |||||||||||||| | |||| |||||||||| |||| |||||||||||||    
T  11744083 ggcaatacaatatttgtcgaaatattaaccattttattttatgtcctgccagatgagaaccaca 11744146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 16146020 - 16146095
Alignment:
Q  25 catgtttttggcactcttgacacccttttgcgaactcaatgcggtttttcaacatggatgggcaatacaagccttg 100  Q
    ||||||| |||||||||||||| |||||||| |||||||||| || |||||  ||||||   |||||||| |||||    
T  16146020 catgtttctggcactcttgacatccttttgcaaactcaatgcagtctttcacaatggatatccaatacaacccttg 16146095  T

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