View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19722_low_13 (Length: 433)

Name: NF19722_low_13
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19722_low_13
NF19722_low_13
[»] chr5 (1 HSPs)
chr5 (1-418)||(2625898-2626302)
[»] chr2 (12 HSPs)
chr2 (154-233)||(37559325-37559404)
chr2 (156-232)||(8884446-8884522)
chr2 (157-233)||(36772396-36772472)
chr2 (157-233)||(36793510-36793586)
chr2 (157-232)||(34643003-34643078)
chr2 (157-231)||(36756170-36756244)
chr2 (158-232)||(3197568-3197642)
chr2 (157-231)||(4713110-4713184)
chr2 (157-231)||(24359791-24359865)
chr2 (157-231)||(39082468-39082542)
chr2 (157-231)||(42968150-42968224)
chr2 (176-236)||(38723917-38723977)
[»] chr4 (8 HSPs)
chr4 (158-236)||(4690130-4690208)
chr4 (155-231)||(33871041-33871117)
chr4 (157-232)||(31553694-31553769)
chr4 (155-232)||(6067667-6067744)
chr4 (157-232)||(50968245-50968320)
chr4 (158-231)||(34505290-34505363)
chr4 (158-231)||(52818059-52818132)
chr4 (155-231)||(6071143-6071218)
[»] chr8 (7 HSPs)
chr8 (155-231)||(24864606-24864682)
chr8 (157-231)||(38085946-38086020)
chr8 (155-232)||(7895152-7895229)
chr8 (158-232)||(44415934-44416008)
chr8 (157-232)||(40866298-40866373)
chr8 (159-233)||(9963284-9963358)
chr8 (158-232)||(42014306-42014380)
[»] chr3 (9 HSPs)
chr3 (155-231)||(11580201-11580277)
chr3 (159-231)||(35679472-35679544)
chr3 (157-231)||(35687869-35687943)
chr3 (157-231)||(52638656-52638730)
chr3 (152-231)||(35692212-35692291)
chr3 (157-231)||(29618312-29618386)
chr3 (157-231)||(41552100-41552174)
chr3 (159-231)||(1488013-1488085)
chr3 (159-231)||(2031252-2031324)
[»] chr7 (6 HSPs)
chr7 (157-232)||(30034301-30034376)
chr7 (157-232)||(46075151-46075226)
chr7 (157-231)||(25287960-25288034)
chr7 (159-236)||(34984425-34984502)
chr7 (157-233)||(37022193-37022269)
chr7 (159-232)||(46972138-46972211)
[»] chr6 (8 HSPs)
chr6 (157-232)||(7432419-7432494)
chr6 (159-234)||(7432980-7433055)
chr6 (157-232)||(7441936-7442011)
chr6 (154-232)||(7425624-7425702)
chr6 (156-232)||(3992806-3992882)
chr6 (154-220)||(7414596-7414662)
chr6 (154-232)||(7418533-7418611)
chr6 (157-221)||(7420519-7420583)
[»] chr1 (10 HSPs)
chr1 (157-231)||(37369512-37369586)
chr1 (159-232)||(23058052-23058125)
chr1 (159-232)||(23057680-23057753)
chr1 (159-232)||(23057865-23057938)
chr1 (159-232)||(23061981-23062054)
chr1 (159-233)||(43065996-43066075)
chr1 (157-232)||(30340910-30340985)
chr1 (158-232)||(30320744-30320818)
chr1 (164-218)||(23057567-23057621)
chr1 (164-218)||(23061868-23061922)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 2626302 - 2625898
Alignment:
Q  1 tttctggcagattcttttaattttattaagattgtccatcgatggttcaagttcaacggtgaagatctaccaaggaatgaatagaaacttttgcataagt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626302 tttctggcagattcttttaattttattaagattgtccattgatggttcaagttcaacggtgaagatctaccaaggaatgaatagaaacttttgcataagt 2626203  T
Q  101 gagagagagttgagttatacactataacaatgtttagcgcagactatatgcattaaatggggatgtagctcagatggtagagcgctcgcttagcatgcga 200  Q
    ||||||||||||| ||  | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626202 gagagagagttgaattcaagactataacaatgtttagcgcagactttatacattaaatggggatgtagctcagatggtagagcgctcgcttagcatgcga 2626103  T
Q  201 gaggtacggggatcgataccccgcatctccatatttcga--gttttatgcatttttcaataattcccatcttttgccattcttcttcaacatcaac---a 295  Q
    |||||||||||||||||||||||||||||||| || |||   |||| ||||||||||||||||||||||||||||| ||| |||||||||||||||   |    
T  2626102 gaggtacggggatcgataccccgcatctccatgttgcgatttttttttgcatttttcaataattcccatcttttgctatttttcttcaacatcaacacga 2626003  T
Q  296 cgcatggtaaaagttctgaggaaacactattaaaaagcttaactaacatagtgataaatataacggtgttttccaaattgattaactaatcctacacaac 395  Q
    |||||||||||              ||||||||||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2626002 cgcatggtaaa--------------actattaaaaagct----taacatagtgataaatataacagtgttttccaaattgattaactaatcctacacaac 2625921  T
Q  396 aatgatcgtattagtaagaatta 418  Q
    |||||||||||||||||||||||    
T  2625920 aatgatcgtattagtaagaatta 2625898  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 37559404 - 37559325
Alignment:
Q  154 taaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37559404 taaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 37559325  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 8884446 - 8884522
Alignment:
Q  156 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8884446 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 8884522  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 36772472 - 36772396
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 36772396  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 36793586 - 36793510
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 36793510  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 34643078 - 34643003
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34643078 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 34643003  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 3197568 - 3197642
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| | ||| ||||||||||||||    
T  3197568 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 24359791 - 24359865
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  24359791 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

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Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 39082468 - 39082542
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  39082468 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

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Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 38723917 - 38723977
Alignment:
Q  176 ggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatattt 236  Q
    ||||| || ||||||||||| || ||||||| ||| || |||||||||||| |||||||||    
T  38723917 ggtagggcactcgcttagcaagcaagaggtatgggtattgataccccgcatttccatattt 38723977  T

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Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 4690208 - 4690130
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatattt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatattt 4690130  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 33871117 - 33871041
Alignment:
Q  155 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33871117 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 31553694 - 31553769
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 31553769  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 6067667 - 6067744
Alignment:
Q  155 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||    
T  6067667 aaatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccat 6067744  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 50968320 - 50968245
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  50968320 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 50968245  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| ||||||||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 6071143 - 6071218
Alignment:
Q  155 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| |||||| | ||| | ||| |||||||||||||    
T  6071143 aaatggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctcca 6071218  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 24864606 - 24864682
Alignment:
Q  155 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24864606 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 7895229 - 7895152
Alignment:
Q  155 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  7895229 aaatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 7895152  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 44415934 - 44416008
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 44416008  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 40866373 - 40866298
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  40866373 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 40866298  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 9963358 - 9963284
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 233  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccata 9963284  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 42014306 - 42014380
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  42014306 tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 42014380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 11580201 - 11580277
Alignment:
Q  155 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11580201 aaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 35679472 - 35679544
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 35692212 - 35692291
Alignment:
Q  152 attaaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||||    
T  35692212 attatatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatagggattgataccctgcatctcca 35692291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 41552100 - 41552174
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  41552100 atggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 30034301 - 30034376
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 30034376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 46075226 - 46075151
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46075226 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 46075151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 25287960 - 25288034
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25287960 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 34984502 - 34984425
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatattt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34984502 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccaaattt 34984425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 37022269 - 37022193
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 233  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  37022269 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccata 37022193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 46972211 - 46972138
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||| |||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccat 46972138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 7432494 - 7432419
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 7432419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 7433055 - 7432980
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatat 234  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccatat 7432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 7442011 - 7441936
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccat 7441936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 7425702 - 7425624
Alignment:
Q  154 taaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  7425702 taaatggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccat 7425624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 3992882 - 3992806
Alignment:
Q  156 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  3992882 aatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 3992806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 7414662 - 7414596
Alignment:
Q  154 taaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgatacc 220  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  7414662 taaatggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgatacc 7414596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 7418611 - 7418533
Alignment:
Q  154 taaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||| |||||||| |||||||||    
T  7418611 taaatggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccat 7418533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 7420583 - 7420519
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccc 221  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  7420583 atggagatgtggatcagatggtagagtgctcgcttagcatgcgagaggtatgcggatcgataccc 7420519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 37369586 - 37369512
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37369586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 23058125 - 23058052
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  23058125 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 23058052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 23057753 - 23057680
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccat 23057680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 23057938 - 23057865
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccat 23057865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 23062054 - 23061981
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccat 23061981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 43065996 - 43066075
Alignment:
Q  159 ggggatgtagctcagatggtagagcgctcgc-----ttagcatgcgagaggtacggggatcgataccccgcatctccata 233  Q
    |||||||||||||| ||||||||||||||||     |||||||||||||||||||||| |||||||||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccata 43066075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 30340985 - 30340910
Alignment:
Q  157 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||| ||| ||||||||||    
T  30340985 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccat 30340910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 30320818 - 30320744
Alignment:
Q  158 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 232  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| ||||||||| ||||||||||    
T  30320818 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccat 30320744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 23057621 - 23057567
Alignment:
Q  164 tgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgata 218  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgata 23057567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 23061922 - 23061868
Alignment:
Q  164 tgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgata 218  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgata 23061868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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