View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19722_low_14 (Length: 428)
Name: NF19722_low_14
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 7912239 - 7911816
Alignment:
| Q |
1 |
tttagaacatctctttccttcatagtttttcgacttctctccggaggatagttctatttcttggttcttaatgaggactttgcagctcctccaactcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7912239 |
tttagaacatctctttccttcatagtttttcaacttctctccggaggatagttctatttcttgtttcttaatggggactttgcagctcctccaactcaat |
7912140 |
T |
|
| Q |
101 |
gtggatcagaccatgtctttattggagagatgttcaaatataggtgaactaaagcagattcatggtcaattgttgaaaaaaggaaccatcagacacaagt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7912139 |
gtggagcagaccatgtctttattggagagatgttcaaatataggtgaactaaagcagattcatggtcaattgttgaaaaaaggaaccatcagacacaagt |
7912040 |
T |
|
| Q |
201 |
tgacagtaagcaggctcttaactacatatgcatcaatggagtttagtaacttaacatatgcacgtatggtttttgatcaaataaattcaccgaatactgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7912039 |
tgacagtaagcaggctcttaactacatatgcatcaatggagtttagtaacttaacatatgcacgtatggtttttgatcgaataagttcaccgaatactgt |
7911940 |
T |
|
| Q |
301 |
catgtggaacaccatgatcagggcatattcaaacagtaatgacccagaagaagcattgcttttgtatcatcaattgcttcatcattcaatacctcacaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7911939 |
catgtggaacaccatgatcagggcatattcaaacagtaatgacccagaagaagcattgcttttgtatcatcaaatgcttcatcattcaatacctcacaat |
7911840 |
T |
|
| Q |
401 |
gcttatactttccctttgcttctc |
424 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
7911839 |
gcttatactttccctttccttctc |
7911816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University