View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_17 (Length: 376)
Name: NF19722_low_17
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 2626660 - 2626303
Alignment:
| Q |
19 |
atttgggcctcttaaacatgtgatcataggttcgatatctagctcatgcgtgtgnnnnnnntcacattcaagaaaagaactcatcttgtgttctacatgt |
118 |
Q |
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| T |
2626660 |
atttgggcctcttaaacatgtgatcagaggttcgatatctagctcatgcgtgtgaaaaaaatcacattcaagaagaaaactcatcttgtgtcctacatgt |
2626561 |
T |
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| Q |
119 |
tctttgacggagattaattattgttaagcggtgatagaaactacagatcaatgtcatgtttaaaaaataaa--ttgtttatattattaacttacgttccc |
216 |
Q |
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| T |
2626560 |
tctttgatggagattaattattgttaagcggtcatagaaactacggatcaacgtcatgtttaaaaaaaaaaaattgtttatattattaacttacg--ccc |
2626463 |
T |
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| Q |
217 |
aaatcactattatattcattcatatttgggcttcatagcctttgaaaacataacaatcatttgaaaagttattttctcacctccatgaagggtggtattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2626462 |
aaatcactattatattcattcatatttgggcttcatagcctttgaaaacataacaatcatttgaaaagttcttttctcacctccatgaagggtggtattg |
2626363 |
T |
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| Q |
317 |
tatagaaaggttgtgctataacttttgttcctttcaaaaacattatcagaagtgtgtgat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626362 |
tatagaaaggttgtgctataacttttgttcctttcaaaaacattatcagaagtgtgtgat |
2626303 |
T |
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