View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_19 (Length: 336)
Name: NF19722_low_19
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 31548581 - 31548887
Alignment:
| Q |
10 |
acatcatcataacagatataccattttgggctaggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgccttctgtgctacg |
109 |
Q |
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| T |
31548581 |
acatcatcacaacagatataccattttgggctaggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgccttctgtgctacg |
31548680 |
T |
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| Q |
110 |
actttcatccggcaacaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctgannnnn |
209 |
Q |
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| T |
31548681 |
attttcatctggcaacaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctga-tatt |
31548779 |
T |
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| Q |
210 |
nncttataatcaacaaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaat |
309 |
Q |
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| T |
31548780 |
ttcttataatcaacaaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaat |
31548879 |
T |
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| Q |
310 |
cttctaag |
317 |
Q |
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| T |
31548880 |
cttctaag |
31548887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 34650366 - 34650299
Alignment:
| Q |
244 |
ttaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaatct |
311 |
Q |
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| T |
34650366 |
ttaccaaaattgtattatgtaattctttcctcagcttctccccttctataagtttgtattctgcatct |
34650299 |
T |
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