View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_2 (Length: 539)
Name: NF19722_low_2
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 523
Target Start/End: Complemental strand, 39952548 - 39952039
Alignment:
| Q |
12 |
atgaagtgattagcgaaattagagcaccaacaaaaccagagttcaatctactcacaccatatccattgacatctgcggaaaggatatacaaaaacaataa |
111 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952548 |
atgaagtgattagcgaaattaaagcaccaacaaaaccagagttcaatctactcacaccatatccattgacatctgcggaaaggatatacaaaaacaataa |
39952449 |
T |
|
| Q |
112 |
tcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaacatcttgatccttcgatgg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
39952448 |
tcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccgttatagtgaaacatcttgatccttcaatgg |
39952349 |
T |
|
| Q |
212 |
nnnnnnnnnnnnnnnnnnnnnnnnntgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatc |
311 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952348 |
aaaaagagcaaaataaaacgaaaaatgctttcttagtggatgaaattatatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatc |
39952249 |
T |
|
| Q |
312 |
acctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataacc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952248 |
acctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataacc |
39952149 |
T |
|
| Q |
412 |
aagtaattgcaatcaaatctaaagctaaatcctttggtgttacagggagaaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatct |
511 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952148 |
aagtaattgcaatcaaatctaaagctaaatcccttg--gttacagggagaaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatct |
39952051 |
T |
|
| Q |
512 |
aatacatatttt |
523 |
Q |
| |
|
|||||||||||| |
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|
| T |
39952050 |
aatacatatttt |
39952039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 94 - 428
Target Start/End: Complemental strand, 30339802 - 30339468
Alignment:
| Q |
94 |
gatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaac |
193 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339802 |
gatatacaaaaacaataatcagcaagagtttgagatactactgacctgttataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaaa |
30339703 |
T |
|
| Q |
194 |
atcttgatccttcgatggnnnnnnnnnnnnnnnnnnnnnnnnntgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatg |
293 |
Q |
| |
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| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339702 |
aacttgatccttcaatggaaaaagaacaaaatcaaatgaaaaatgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatg |
30339603 |
T |
|
| Q |
294 |
ttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctca |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
30339602 |
ttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgaaatgatttgaattgcttgagagaaattactctca |
30339503 |
T |
|
| Q |
394 |
gccaagttatatataaccaagtaattgcaatcaaa |
428 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
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|
| T |
30339502 |
gccaagttatatataaccaagtgattgcaatcaaa |
30339468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 10116848 - 10116916
Alignment:
| Q |
352 |
ttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattg |
420 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| | |||||| ||||| |||||||||||||||| |
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|
| T |
10116848 |
ttgaatgaattgatttgaattgcttgagagaaattattgtcagccctgttatttataaccaagtaattg |
10116916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 258 - 523
Target Start/End: Original strand, 34230259 - 34230522
Alignment:
| Q |
258 |
tgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaat |
357 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| |
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| T |
34230259 |
tgtatgaccatcagcaaaatattctcctatagtatgttttctgattcatctatcacctcataaatgtcatcaaacttatcacttttaataattgttcaat |
34230358 |
T |
|
| Q |
358 |
gagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatcctttggtgttacagg |
457 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||| ||| |||||||| |
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|
| T |
34230359 |
gagatgatttgaattgcttgagagaaattactctcagccaagttatatataaccaagggatagcaatcaaatctaaaaccaaatcccttg--gttacagg |
34230456 |
T |
|
| Q |
458 |
gagaaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatctaatacatatttt |
523 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34230457 |
gataaaagccaacaaacataatcaagagatatttactcaacataatttaaatctaatacatatttt |
34230522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 34230119 - 34230240
Alignment:
| Q |
90 |
aaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtg |
189 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34230119 |
aaaggatgtacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtg |
34230218 |
T |
|
| Q |
190 |
aaacatcttgatccttcgatgg |
211 |
Q |
| |
|
||| ||||||||||||| |||| |
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|
| T |
34230219 |
aaaaatcttgatccttcaatgg |
34230240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 503
Target Start/End: Original strand, 28546919 - 28547073
Alignment:
| Q |
348 |
attgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatcctttg |
447 |
Q |
| |
|
|||||| |||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| ||| |
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|
| T |
28546919 |
attgttaaatgagatgatttgaattgcttgagaaaaattactctcagccttgttatttataaccaagtgattgcaatcaaatctacagctaaatcccttg |
28547018 |
T |
|
| Q |
448 |
gtgttacagggagaaaaatcaacaaacataatca-agagatatttgctcaacataat |
503 |
Q |
| |
|
|| ||||| ||||| |||||||| |||| | |||||||||| ||||||||||| |
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|
| T |
28547019 |
--attgtagggataaaaaccaacaaacctaatgatagagatatttactcaacataat |
28547073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 37222123 - 37221990
Alignment:
| Q |
78 |
tgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatga |
177 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37222123 |
tgacatctgcgaaaaggatatacaaaaacaattatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatga |
37222024 |
T |
|
| Q |
178 |
cccattatagtgaaacatcttgatccttcgatgg |
211 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
37222023 |
cccattatagtgaaaaatcttgatctttcaatgg |
37221990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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