View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_23 (Length: 256)
Name: NF19722_low_23
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_23 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 35362461 - 35362705
Alignment:
| Q |
12 |
atcatcaaccgtatatgggaaaatgttttcgatcatgcaataggttttggataccgaaaatttactcgactataatgtataatgggaaatgtgattacac |
111 |
Q |
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| T |
35362461 |
atcatcaaccgtatatgggaaaatgttttcgatcatgcaataggttttggataccgaaaatttactcgactataatgtataatgggaaatgtgattccac |
35362560 |
T |
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| Q |
112 |
agtgcatgaaattaaaatatggtctgtctataaaatgtgatgccaaaatgcaaacgataagtgattccacaaactatacatatttgagaaggcacaccaa |
211 |
Q |
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| T |
35362561 |
agtgcatgaaattaaaatatggtctgtctataaaatgtgatgccaaaatgcaaacgataagtgattccacaaactatacatatttgagaaggcacaccaa |
35362660 |
T |
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| Q |
212 |
cccttatcaaggtcaacatcctcaaaaacaagtattgggctcttt |
256 |
Q |
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| T |
35362661 |
cccttatcaaggtcaacatcctcaaaaacaagtattgggctcttt |
35362705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 35384294 - 35384210
Alignment:
| Q |
172 |
gtgattccacaaactatacatatttgagaaggcacaccaacccttatcaaggtcaacatcctcaaaaacaagtattgggctcttt |
256 |
Q |
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| T |
35384294 |
gtgattccacaaattagacatatttgagaaggcacaccaacccttatcaagatcaacatcctcaaaaacaactatcgggctcttt |
35384210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 44178807 - 44178775
Alignment:
| Q |
210 |
aacccttatcaaggtcaacatcctcaaaaacaa |
242 |
Q |
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| T |
44178807 |
aacccttatcaaggtcaacgtcctcaaaaacaa |
44178775 |
T |
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