View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_4 (Length: 518)
Name: NF19722_low_4
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 409
Target Start/End: Original strand, 11073369 - 11073765
Alignment:
| Q |
13 |
catcaggttgttcttcatgggataattttcttccatatttttgccatggctctgcaacaataattcaatttctgcaagcgcataacttggcaactgatgg |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |||||| |||| |
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| T |
11073369 |
catcaggttgttcttcatgggataatcttcttccatatttttaccatggctctgcaacaataattcaatttcttccagcgcataactttgcaactaatgg |
11073468 |
T |
|
| Q |
113 |
tgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnnnnnnnntcaccatataaattataaacatgaacaaagcttcataat |
212 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
11073469 |
tgatccaacaccaaatcttcatgtttgcagggaacaataaggaataagacattaaaaaaaatcaccatataaattatatacatgaacaaagcttcataat |
11073568 |
T |
|
| Q |
213 |
ataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatcttaaccataccgctag |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
11073569 |
ataaatcagatcagtttcatattgaggggcagcacggtccgctatcatcctataagaacagcaataatcatgttgattactatctgaaccataccgctag |
11073668 |
T |
|
| Q |
313 |
ttannnnnnncacataccacagcctacatctcataactggagctttctagtataggacatattattattaagactgttattaaactgtgctccacgt |
409 |
Q |
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||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |
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| T |
11073669 |
ttatttttttcacataccacaacctacatctcaaaactggagctttctagtatatgacatattattattaagattgttattaaattgtgctccacgt |
11073765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 45091324 - 45091030
Alignment:
| Q |
13 |
catcaggttgttcttcatgggataattttcttccatatttttgccatggctctgcaacaataattcaatttctgcaagcgcataacttggcaactgatgg |
112 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
45091324 |
catcatgttgttcttcatgagataattttcttccatatttttgccatggctctgcaacaataattcaatttccgccagcgcataactttgcaactgatgg |
45091225 |
T |
|
| Q |
113 |
tgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnnnnnnnntcaccatataaattataaacatgaacaaagcttcataat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45091224 |
tgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattaaaaaaaatcaccatataaattataaacatgaacaaagcttcataat |
45091125 |
T |
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| Q |
213 |
ataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatcttaaccatacc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45091124 |
ataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatctgaaccatacc |
45091030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 396 - 503
Target Start/End: Complemental strand, 45091016 - 45090894
Alignment:
| Q |
396 |
actgtgctccacgtttgcggcggtggtggtggattcagatcccgcttcttc---------------ctttctcatgcatacgcttctttcttcgcagctt |
480 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
45091016 |
actgtgctccacgtttgcggcggtggtggtggattcagatcccgcttcttcttccaacgcttcttcctttctcatgcatacgcttctttcttagcagctt |
45090917 |
T |
|
| Q |
481 |
ctcaaatcacttgatctcctttg |
503 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45090916 |
ctcaaatcacttgatctcctttg |
45090894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 11074716 - 11074781
Alignment:
| Q |
438 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11074716 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttg |
11074781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 37253847 - 37254131
Alignment:
| Q |
13 |
catcaggttgttcttcatgggataattttcttccatatttttgccatggctctgcaacaataattcaatttctgcaagcgcataacttggcaactgatgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
37253847 |
catcaggttgttcttcatgggataatcttcttccatatttttgccatggctctgcaacaataattcaatttctgccggcgcataactttgcaactgatgg |
37253946 |
T |
|
| Q |
113 |
tgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnnnnnnnntcaccatataaattataaacatgaacaaagcttcataat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37253947 |
tgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagatattaaaaaaaatcaccatataaattataaacatgaacaaagcttcataat |
37254046 |
T |
|
| Q |
213 |
ataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatct |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37254047 |
ataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacaacaataatcacgttgattactatct |
37254131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 37265999 - 37266109
Alignment:
| Q |
299 |
aaccataccgctagttannnnnnncacataccacagcctacatctcataactggagctttctagtataggacatattattattaagactgttattaaact |
398 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37265999 |
aaccataccgctagttatttttttcacataccacaacctacatctcacaactggagctttctagtataggacatattattattaagactgttattaaact |
37266098 |
T |
|
| Q |
399 |
gtgctccacgt |
409 |
Q |
| |
|
|||||||||| |
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|
| T |
37266099 |
ttgctccacgt |
37266109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 37266985 - 37267050
Alignment:
| Q |
438 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37266985 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttg |
37267050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 198 - 406
Target Start/End: Original strand, 17961299 - 17961512
Alignment:
| Q |
198 |
acaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatct |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17961299 |
acaaagcttcataatataaatcagatcagtttcatattgagtagcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatct |
17961398 |
T |
|
| Q |
298 |
taaccataccgctagttannnnnnncacatacca-----cagcctacatctcataactggagctttctagtataggacatattattattaagactgttat |
392 |
Q |
| |
|
|| |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17961399 |
gaatcataccgctagttatttttttcacataccatagcctagcctacatctcataacttgagctttctagtataggagatattattattaagactgttat |
17961498 |
T |
|
| Q |
393 |
taaactgtgctcca |
406 |
Q |
| |
|
||||||| |||||| |
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|
| T |
17961499 |
taaactgcgctcca |
17961512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 17962451 - 17962515
Alignment:
| Q |
439 |
gcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttg |
503 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
17962451 |
gcttcttcctttctcatgcatacgcttctttcttcacagcttctcaaatcacttgatctcctttg |
17962515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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