View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19722_low_9 (Length: 472)
Name: NF19722_low_9
Description: NF19722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19722_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 454
Target Start/End: Original strand, 35362676 - 35363121
Alignment:
| Q |
9 |
acatcatcaaaaacaagtattgggctctttccaccgagctctagaaaaacaggctgcaaacaagaaaacacaaattcgatattgttgtgaatacggtcac |
108 |
Q |
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| T |
35362676 |
acatcctcaaaaacaagtattgggctctttccaccgagctctagaaaaacaggctgcaaacaagaaaacacaaattcgatattgttgtgaattcggtcac |
35362775 |
T |
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| Q |
109 |
ttgttcaaaatcaacaagacaacatgtgaaacaaataacaatggcaataatcttgtttaaaaagaatttgtagatattcatgcttaaaaataccttgatt |
208 |
Q |
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| T |
35362776 |
ttgttcaaaatcaacaagaccacatgtgaaacaaataacaatggcaataatcttgtttaaaaagaatttgtagatattcatgcttaaaaataccttgatt |
35362875 |
T |
|
| Q |
209 |
agttgtgctgcagctgtcataatcttgctcccagttgcagagctaccggtaaaggaaatctatcaaatagcgggcacaatggtacaatattttagcaaac |
308 |
Q |
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| T |
35362876 |
agttgtgctgcagctgtcataatcttgctcccagttgcagagctaccggtaaaggaaatctatcaaatagcgggcacaatggtacaatattttagcaaac |
35362975 |
T |
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| Q |
309 |
ttaaaagatggaaatatatcaacacttgcaacaatatctagctccttatagttttgattccactaatgactaaaatattttgaagtttcgaaccatatct |
408 |
Q |
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| T |
35362976 |
ttaaaagatggaaatatatcaacacttgcaacaatatctagctccttatagttttgattccactaatgactaaaatattttgaagtttcgaaccatatct |
35363075 |
T |
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| Q |
409 |
acatcaagatgagatgccaaagaagcgccagcttcatggcctaatc |
454 |
Q |
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| T |
35363076 |
acatcaggatgagatgccaaagaagcgccagcttcatggcctaatc |
35363121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 173 - 313
Target Start/End: Complemental strand, 35384133 - 35383993
Alignment:
| Q |
173 |
aatttgtagatattcatgcttaaaaataccttgattagttgtgctgcagctgtcataatcttgctcccagttgcagagctaccggtaaaggaaatctatc |
272 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35384133 |
aatttgtagataatcatgcttaaaaataccttgattagctgtgccgcagctgtcataatcttactcccagttgcagagctaccggtaaaggaaatctatc |
35384034 |
T |
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| Q |
273 |
aaatagcgggcacaatggtacaatattttagcaaacttaaa |
313 |
Q |
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| T |
35384033 |
gaataatgcgcacaatggtacaatatcttagaaagcttaaa |
35383993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 35384239 - 35384167
Alignment:
| Q |
9 |
acatcatcaaaaacaagtattgggctctttccaccgagctctagaaaaacaggctgcaaacaagaaaacacaa |
81 |
Q |
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||||| |||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
35384239 |
acatcctcaaaaacaactatcgggctctttccaccaagctctagtgaaacaggctgcaaacaagaaaacacaa |
35384167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 44178572 - 44178500
Alignment:
| Q |
189 |
tgcttaaaaataccttgattagttgtgctgcagctgtcataatcttgctcccagttgcagagctaccggtaaa |
261 |
Q |
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||||| |||||||||||| || || ||||||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
44178572 |
tgcttcaaaataccttgaccagctgagctgcagctgtcataattttgctcccagttgcagagcttccagtaaa |
44178500 |
T |
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