View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19723_high_1 (Length: 928)
Name: NF19723_high_1
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 857; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 16 - 916
Target Start/End: Complemental strand, 184523 - 183623
Alignment:
| Q |
16 |
aaactgtcacttgcaagttccctatattcaggggtgactttgacatcaaacgtagtcaatatagtagaattctcctggacgttcttttcaagcattgcac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
184523 |
aaactgtcacttgcaagttccctatattcaggggtgactttgacatcaaacgtagtcaatatagtagaattctcctggacgttcttttcaagcattgctc |
184424 |
T |
|
| Q |
116 |
ttgcactggccttcttcacatctttcttatgtacacgacctatagcgctgacaggaatattcacttctggagttttcttaaaattcaatactcctccttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |
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| T |
184423 |
ttgcactggccttcttcacatctttcttatgtacatgatctatagcactgacaggaatattaacttctggagttttcttaaaattcattactcctctttt |
184324 |
T |
|
| Q |
216 |
caataatgagccaggcattgtagcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgctttttta |
315 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184323 |
caataatgagccaggtattgtagcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgctttttta |
184224 |
T |
|
| Q |
316 |
aaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctg |
415 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184223 |
aaatattctaaatcatcatcaggcttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctg |
184124 |
T |
|
| Q |
416 |
attctctacacattcataaacatagaaccgaagaaaaacataattcaataaagtacctgggcagtaatcttgattcccatcacagctttgatttctttgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
184123 |
attctctacacattcataaacatagaaccgaagaaaaacataattcaataaagtacctgggcagtaatcttgattcccatcacagctttgatttctttgt |
184024 |
T |
|
| Q |
516 |
catgtatatacgatccctgaaattagacaaccattacttagctggaaacacactaaataatagaatacagctcctctgtcgaagacccctcaagctcaga |
615 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
184023 |
cgtgtatatacgatccctgaaattagacaaccattacttagctggaaacacactaaataatagaatacagctcctctgtcgaagacccctcaagctcaga |
183924 |
T |
|
| Q |
616 |
ctaaacgggagtttcccatcccttccaaattccaatgacagtaaaaatgaagacctctccatcatagtaatatgaactatgatcaactatacttgttata |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183923 |
ctaaacgggagtttcccatcccttccaaattccaatgacagtaaaaatgaagacttctccatcatagtaatatgaactatgatcaactatacttgttata |
183824 |
T |
|
| Q |
716 |
attcggttccttcgtgttaagcataatgttaagaatctcacagtcatgtcctatgtttccaacacttattatttgcgctcgttcaaatttcttaaagcca |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183823 |
attcggttccttcgtgttaagcataatgttaagaatctcacagtcatgtcctatgtttccaacacttattatttgcgctcgttcaaatttcttaaagcca |
183724 |
T |
|
| Q |
816 |
ttttcctacccaaaccatactttagtaccaaatcaataaaattctaaaagccattttcctacccaaaacatactttagtaccaagaccaaaagagtctct |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183723 |
ttttcctacccaaaccatactttagtaccaaatcaataaaattctaaaagccattttcctacccaaaacatactttagtaccaagaccaaaagagtctct |
183624 |
T |
|
| Q |
916 |
g |
916 |
Q |
| |
|
| |
|
|
| T |
183623 |
g |
183623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 273 - 460
Target Start/End: Original strand, 590090 - 590277
Alignment:
| Q |
273 |
cctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagca |
372 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||| ||| ||||| |||||| |||||||||||||| ||||||| ||||||||||| |||||||||||| |
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|
| T |
590090 |
cctgctcaagactgactccacatcttccatggccacttgtttaacatattccaaatcatcatcaggcttcaccaaatataaactagcaccagcaatagca |
590189 |
T |
|
| Q |
373 |
tgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataatt |
460 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||| |
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|
| T |
590190 |
tgttcaagtccctgcaataacaggaaatcttatcaaatctctcattctctacacatttctaaacataaaaataaagaaaaacataatt |
590277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 468 - 562
Target Start/End: Original strand, 590320 - 590414
Alignment:
| Q |
468 |
gtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaa |
562 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||||||||| || ||||||||||||||||||| |
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|
| T |
590320 |
gtacctgggcagtgatcttgacgcccatcacagctttgatttctttgtgatgcataaatgatccctgaaatttgagaaccattacttagctggaa |
590414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 741 - 848
Target Start/End: Original strand, 590583 - 590689
Alignment:
| Q |
741 |
atgttaagaatctcacagtcatgtcctatgtttccaacacttattatttgcgctcgttcaaatttcttaaagccattttcctacccaaaccatactttag |
840 |
Q |
| |
|
||||||||||| | | | |||| ||||| |||||||||||||| ||||||| | | ||||||||||| || ||| |||||||||||||| |||||||||| |
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|
| T |
590583 |
atgttaagaatataataatcatttcctaagtttccaacacttagtatttgcacccattcaaatttctaaatgcctttttcctacccaaa-catactttag |
590681 |
T |
|
| Q |
841 |
taccaaat |
848 |
Q |
| |
|
|||||||| |
|
|
| T |
590682 |
taccaaat |
590689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 3015000 - 3014935
Alignment:
| Q |
97 |
ttcttttcaagcattgcact----tgcactggccttcttcacatctttcttatgtacacgacctat |
158 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |||||||||| | ||||||| |
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|
| T |
3015000 |
ttcttttcaagcattgcactggcttgcactggccttctccacatccttcttatgtataggacctat |
3014935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 238 - 437
Target Start/End: Complemental strand, 44607446 - 44607247
Alignment:
| Q |
238 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
337 |
Q |
| |
|
||||| ||| ||| || ||| |||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||||| || |
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|
| T |
44607446 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagactgactccacgtcttccaaggctgcttttttaatatatttcaaatcatcattag |
44607347 |
T |
|
| Q |
338 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaaca |
437 |
Q |
| |
|
| |||||||||| |||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
44607346 |
gcttcaccacatgtaaactagcgccagcaacagcgtgttcaagtccctgaaataacaggaaatcttatcaaatctcagattctctacacatttataaaca |
44607247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 238 - 437
Target Start/End: Complemental strand, 44628952 - 44628753
Alignment:
| Q |
238 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
337 |
Q |
| |
|
||||| ||| ||| || ||| |||||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
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|
| T |
44628952 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagaccgactccacgtcttccaaagctgcttttttaatatattccaaatcatcatcag |
44628853 |
T |
|
| Q |
338 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaaca |
437 |
Q |
| |
|
| || |||||||||||||||| |||||||||||||||||||| |||| |||| |||||||| ||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
44628852 |
gctttaccacatataaactagctccagcaatagcatgttcaagcccctgaaatagaaggaaatcatataaaaaatctgattctctacacatttataaaca |
44628753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 466 - 607
Target Start/End: Complemental strand, 44628693 - 44628551
Alignment:
| Q |
466 |
aagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaa-ac |
564 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44628693 |
aagtacctgggcagtgatcttgatgcccatagcagctttgatttctttgtgatggatatacgatccctgaaattagacaaccattacttagctggaagac |
44628594 |
T |
|
| Q |
565 |
acactaaataatagaatacagctcctctgtcgaagacccctca |
607 |
Q |
| |
|
| |||||||| | ||||||||||||| ||| ||| ||||||| |
|
|
| T |
44628593 |
atactaaatagcaaaatacagctcctccgtcaaaggcccctca |
44628551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 466 - 561
Target Start/End: Complemental strand, 44607182 - 44607087
Alignment:
| Q |
466 |
aagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctgga |
561 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44607182 |
aagtacctgggcagtgatcttgatacccatagcagctttgatttctttgtgatggatatatgatccctgaaattagacaaccattacttagctgga |
44607087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 684 - 755
Target Start/End: Complemental strand, 44607073 - 44607003
Alignment:
| Q |
684 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctca |
755 |
Q |
| |
|
|||||||||||||| |||||||||| | || || | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44607073 |
aatatgaactatgaacaactatact-gctaaaacttggttccttcctgttaagcataatgttaagaatctca |
44607003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 736
Target Start/End: Complemental strand, 44628539 - 44628487
Alignment:
| Q |
684 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaag |
736 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
44628539 |
aatatgagctatgaacaactatacttgctataactcggttccttcatgttaag |
44628487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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