View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_high_11 (Length: 439)

Name: NF19723_high_11
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19723_high_11
NF19723_high_11
[»] chr2 (1 HSPs)
chr2 (16-424)||(43053710-43054118)
[»] chr8 (1 HSPs)
chr8 (55-381)||(5399501-5399827)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 43054118 - 43053710
Alignment:
Q  16 caacaattgaaggaagatagtttgattaatggatccttccctctcctaatggaaaatggtaaaccaaaccaagaactaaaattaaggtttatattatggt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43054118 caacaattgaaggaagatagtttgattaatggatccttccctctcctaatggaaaatggtaaaccaaatcaagaactaaaattaaggtttatattatggt 43054019  T
Q  116 tcaagccagcaaatttggaaccaagttggacaaagctactaagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43054018 tcaagccagcaaatttggaaccaagttggacaaagctactaagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtca 43053919  T
Q  216 tgttaagctctatcatgatgctcaccattcacctactttccaacctccttttgataattgtggagtccctagaaaactatgggaggatgtttataaagct 315  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053918 tgttaagctctatcatgatgctcaccattcacctacttttcaacctccttttgataattgtggagtccctagaaaactatgggaggatgtttataaagct 43053819  T
Q  316 attgagggtgcaaaatatttagtatatattgcaggctggtctttcaatcctaagatggttctggtacatatataatctcatttcatactctacattttat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053818 attgagggtgcaaaatatttagtatatattgcaggctggtctttcaatcctaagatggttctggtacatatataatctcatttcatactctacattttat 43053719  T
Q  416 attgatata 424  Q
    |||||||||    
T  43053718 attgatata 43053710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 55 - 381
Target Start/End: Original strand, 5399501 - 5399827
Alignment:
Q  55 cctctcctaatggaaaatggtaaaccaaaccaagaactaaaattaaggtttatattatggttcaagccagcaaatttggaaccaagttggacaaagctac 154  Q
    |||||||| ||||||||||  ||||||||||   |||| ||||| |  |||||||||||||| ||||| ||||| ||||||| ||||| | ||||| |||    
T  5399501 cctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggtttaagcctgcaaaattggaacaaagtttggcaaaggtac 5399600  T
Q  155 taagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtcatgttaagctctatcatgatgctcaccattcacctacttt 254  Q
    |||| | | | || ||||||||| | | |||||| | |||||||| ||||||||||||||| || || || |||||||||||||| ||||| ||||| ||    
T  5399601 taagcaataatgaatttcaagggttaaaggatgcaaaatttccactaaggtctaattgtcaagtcaaactttatcatgatgctcatcattctcctacctt 5399700  T
Q  255 ccaacctccttttgataattgtggagtccctagaaaactatgggaggatgtttataaagctattgagggtgcaaaatatttagtatatattgcaggctgg 354  Q
    ||||||||| ||||||   |||||    || | |||  |||||||||||||||||||||| ||||||||||||||  || |||| ||||||||||  |||    
T  5399701 ccaacctccctttgatccatgtggtactccaaaaaatttatgggaggatgtttataaagccattgagggtgcaaagcatatagtttatattgcagcttgg 5399800  T
Q  355 tctttcaatcctaagatggttctggta 381  Q
    ||  | ||||| ||||||||| |||||    
T  5399801 tccctaaatcccaagatggttttggta 5399827  T

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