View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_high_13 (Length: 433)
Name: NF19723_high_13
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 41546984 - 41547387
Alignment:
| Q |
17 |
tccctggttaaagggaaaa-aatatttataaaatcaaacaatctgatatagaaaagcaagaaggaaaatgtcttgcgtcaatgagctaggagcaatggat |
115 |
Q |
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| T |
41546984 |
tccctggttaaagggaaaaaaatatttataaaatcaaacaatctgatatagaaaagcaagaaggaaaatgtcttgtgtcaatgagctaggagcaatggat |
41547083 |
T |
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| Q |
116 |
ataacacaaataattggagcatgcaaacgtgaaaatgatatcaaaattaaacaagttcaatctagttagaggattactaaatatgaaatttaaatcaaat |
215 |
Q |
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| T |
41547084 |
ataacacaaataattggagcatgcaaacgtgaaaatgatatcaaaattaaacaagttcaatctagttagaggattactaaatatgaaatttaaatcaaat |
41547183 |
T |
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| Q |
216 |
gtttttgcgaggcatatcaaaaagagaaacaaacatggacttcacattgtaaatgaccattggtagatgaacatatgggttaagcttcttttctacaagg |
315 |
Q |
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| T |
41547184 |
gtttttgcgaggcatgtcaaaaagagaaacaaacatggacttcacattgtaaatgaccattggtagatgaacatatgggttaagcttctttactacaagg |
41547283 |
T |
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| Q |
316 |
atgattcatgcaccatgttcttcgtattctgcaaaaaagaaagtgtgtaaaatggaaaacatttttgtgtaacaacaatgcatggtgatcatggtgaaga |
415 |
Q |
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| T |
41547284 |
atgattcatgcaccatgttcttcgtattctgcaaaaaagaaagtgtgtaaaatggaaaacatttttgtgtaacaacaatgcatggtgatcatggtgaaga |
41547383 |
T |
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| Q |
416 |
attt |
419 |
Q |
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|||| |
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| T |
41547384 |
attt |
41547387 |
T |
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