View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_high_14 (Length: 425)

Name: NF19723_high_14
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19723_high_14
NF19723_high_14
[»] chr7 (6 HSPs)
chr7 (15-300)||(514633-514924)
chr7 (195-285)||(529965-530055)
chr7 (340-409)||(515023-515093)
chr7 (340-399)||(530205-530264)
chr7 (154-194)||(30723069-30723109)
chr7 (154-194)||(44821959-44821999)
[»] chr8 (6 HSPs)
chr8 (153-184)||(6509343-6509374)
chr8 (155-194)||(25097387-25097426)
chr8 (142-184)||(8578561-8578603)
chr8 (153-194)||(27028830-27028871)
chr8 (154-194)||(1930035-1930075)
chr8 (147-179)||(39274529-39274561)
[»] chr3 (5 HSPs)
chr3 (153-199)||(46886717-46886763)
chr3 (153-198)||(18405857-18405902)
chr3 (155-184)||(24158543-24158572)
chr3 (154-194)||(1217830-1217870)
chr3 (156-184)||(41452525-41452553)
[»] chr5 (3 HSPs)
chr5 (154-195)||(18543225-18543266)
chr5 (153-194)||(32942617-32942658)
chr5 (154-194)||(41957481-41957521)
[»] chr2 (3 HSPs)
chr2 (153-194)||(10884551-10884592)
chr2 (154-194)||(3049974-3050014)
chr2 (153-201)||(13736316-13736364)
[»] chr1 (1 HSPs)
chr1 (153-194)||(7137028-7137069)
[»] chr6 (2 HSPs)
chr6 (153-185)||(4308563-4308595)
chr6 (156-184)||(31686403-31686431)
[»] chr4 (1 HSPs)
chr4 (154-186)||(36748276-36748308)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 514633 - 514924
Alignment:
Q  15 taggaattaatgctccaacatcacaatcatttctaaattatctatttttgatgattatctatggaactattctactctacagaaggaagcctctcaaggt 114  Q
    ||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  514633 taggaattaatgctccaacgtcacagtcgtttctaaattatgtatttttgatgattatctatggaactattctactctacagaaggaaacctctcaaggt 514732  T
Q  115 tatatctactctttgctaattcttatgttatgtacaacctataagctgttttcataagctatcctggagacctt-----------ctgaaattaacttcg 203  Q
    ||||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| |||           |||||| ||||||||    
T  514733 tatatttactctttgctaattc-----ttatgtacaacctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaaataacttcg 514827  T
Q  204 tattgcttctaatacaggcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagtaactatctttcatggt 300  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  514828 tattcgttctaatacaggcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagtaactatctttcatggt 514924  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 529965 - 530055
Alignment:
Q  195 ttaacttcgtattgcttctaatacaggcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagta 285  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  529965 ttaacttcatattggttctaatacatgcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagta 530055  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 515023 - 515093
Alignment:
Q  340 atttatgaggacaaaaaacctaataagtttataggtgttt-tggaaaatttcaagtgcatgagttgttttc 409  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  515023 atttatgaggacaaaaaacctaataagtttataggtgtttatggaaaagttcaagtgcatgagttgttttc 515093  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 530205 - 530264
Alignment:
Q  340 atttatgaggacaaaaaacctaataagtttataggtgttt-tggaaaatttcaagtgcatg 399  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||| || |||||||||    
T  530205 atttatgaggaccaaaaac-taataagtttataggtgtttatggaaaagttgaagtgcatg 530264  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 30723109 - 30723069
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||| |||||||||||||||||||||| ||| |||||    
T  30723109 tataagctattttcataagctatcctggagagcttttgaaa 30723069  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 44821959 - 44821999
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  44821959 tataagctgttttcataagctattctggagaacttatgaaa 44821999  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 184
Target Start/End: Complemental strand, 6509374 - 6509343
Alignment:
Q  153 ctataagctgttttcataagctatcctggaga 184  Q
    ||||||||||||||||||||||||||||||||    
T  6509374 ctataagctgttttcataagctatcctggaga 6509343  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 25097387 - 25097426
Alignment:
Q  155 ataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  25097387 ataagctgttttcataagctatcctggagagcttatgaaa 25097426  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 8578561 - 8578603
Alignment:
Q  142 ttatgtacaacctataagctgttttcataagctatcctggaga 184  Q
    |||||||||  |||||||||||||||||||||||||| |||||    
T  8578561 ttatgtacagactataagctgttttcataagctatcccggaga 8578603  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 27028830 - 27028871
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  27028830 ctataagctgttttcataagctatcttggagagcttatgaaa 27028871  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 1930035 - 1930075
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||| ||| |||||| |||||    
T  1930035 tataagctgttttcataagctatcttggtgaccttgtgaaa 1930075  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 39274529 - 39274561
Alignment:
Q  147 tacaacctataagctgttttcataagctatcct 179  Q
    ||||| |||||||||||||||||||||||||||    
T  39274529 tacaatctataagctgttttcataagctatcct 39274561  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 46886763 - 46886717
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaattaac 199  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| ||||    
T  46886763 ctataagctgttttcataagctatcttggagaacttttgaaaataac 46886717  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 18405902 - 18405857
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaattaa 198  Q
    ||||||| ||||||||||||||||| |||||| ||| |||||||||    
T  18405902 ctataagttgttttcataagctatcttggagaacttatgaaattaa 18405857  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 24158572 - 24158543
Alignment:
Q  155 ataagctgttttcataagctatcctggaga 184  Q
    ||||||||||||||||||||||||||||||    
T  24158572 ataagctgttttcataagctatcctggaga 24158543  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 1217870 - 1217830
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  1217870 tataagctgttttcataagctatccttgagaacttatgaaa 1217830  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 41452525 - 41452553
Alignment:
Q  156 taagctgttttcataagctatcctggaga 184  Q
    |||||||||||||||||||||||||||||    
T  41452525 taagctgttttcataagctatcctggaga 41452553  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 18543266 - 18543225
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaat 195  Q
    |||||| |||||||||||||||||||||||| ||| ||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatgaaat 18543225  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 32942617 - 32942658
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  32942617 ctataagctgttttcataagctatcttggagaacttatgaaa 32942658  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 41957521 - 41957481
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  41957521 tataagctgttttcataagctatccttgagaacttatgaaa 41957481  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 10884592 - 10884551
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||||| |||| ||| |||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatgaaa 10884551  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 3049974 - 3050014
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  3049974 tataagctgttttcataagctatcatggagagcttatgaaa 3050014  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 13736364 - 13736316
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaattaactt 201  Q
    |||||||||||||||||||||||| || |||| ||| ||||| ||||||    
T  13736364 ctataagctgttttcataagctatactagagagcttatgaaaataactt 13736316  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 7137069 - 7137028
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  7137069 ctataagctgttttcataagctatcttggagaacttatgaaa 7137028  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 4308563 - 4308595
Alignment:
Q  153 ctataagctgttttcataagctatcctggagac 185  Q
    ||||||| |||||||||||||||||||||||||    
T  4308563 ctataagttgttttcataagctatcctggagac 4308595  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 31686431 - 31686403
Alignment:
Q  156 taagctgttttcataagctatcctggaga 184  Q
    |||||||||||||||||||||||||||||    
T  31686431 taagctgttttcataagctatcctggaga 31686403  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 36748308 - 36748276
Alignment:
Q  154 tataagctgttttcataagctatcctggagacc 186  Q
    |||||||||||||||||||||||| ||||||||    
T  36748308 tataagctgttttcataagctatcttggagacc 36748276  T

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