View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_high_16 (Length: 399)
Name: NF19723_high_16
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 21700924 - 21701306
Alignment:
| Q |
11 |
atcatcacttcttgacctgccttagaaagacatttactaatccatgaattgatgtgattccacacttggaccttaatgtagccaaacgttgactttttat |
110 |
Q |
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| T |
21700924 |
atcatcacttcttgacctgccttagaaagacatttactaatccatgaattgatgcgattccacacgcggtccttaatttagccaaacgttgaatttttat |
21701023 |
T |
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| Q |
111 |
ctctatcgatcactgatggtaaccctagatatttaccagtacccaacacagactggacacccattgtgtcagctattgtacctttcaattcagacgaaac |
210 |
Q |
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| T |
21701024 |
ctctatcgatcattgatggtaaccc-agatatttaccagtacccaacacagactggacacccattgtgtcagctattgtacctttcaattcagatgaaac |
21701122 |
T |
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| Q |
211 |
attacgactatagtaaatctctaattttgggagactaataggctggcctgacactgcctcataaaccgttagaatatttttcatagcatgagcctgactt |
310 |
Q |
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| T |
21701123 |
attacgactacagtaaatctttgattttggaagactaatagcttgtcccgacactgcctcataaaccgttagaatatttttcatagcatgagcctgactt |
21701222 |
T |
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| Q |
311 |
tcttcagctttaaaaaacataaaacaatcatctgcaaatagaagatgagaaatagaaggtgcaccgcgacaaatagaggtacct |
394 |
Q |
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| T |
21701223 |
tcttcagctttaaaaaacagaaaacaatcatctgcaaatagaagatgagaaacagaaggtgcaccgcgacaaatagaggtacct |
21701306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 31159060 - 31158962
Alignment:
| Q |
264 |
ctgcctcataaaccgttagaatatttttcatagcatgagcctgactttcttcagctttaaaaaacataaaacaatcatctgcaaatagaagatgagaaa |
362 |
Q |
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| T |
31159060 |
ctgcctcatacaccgtaagagtagacttcataacatgggcctgactctcttcagctttgaaaaaaagaaaacaatcgtccgcaaatagaagatgagaaa |
31158962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 10982855 - 10982936
Alignment:
| Q |
283 |
aatatttttcatagcatgagcctgactttcttcagctttaaaaaacataaaacaatcatctgcaaatagaagatgagaaata |
364 |
Q |
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| T |
10982855 |
aatatttttcatagcttgggcctgaccttctgttgctttaaaaaatagaaagcaatcatctgcaaagagcagatgcgaaata |
10982936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 10396026 - 10396085
Alignment:
| Q |
314 |
tcagctttaaaaaacataaaacaatcatctgcaaatagaagatgagaaatagaaggtgca |
373 |
Q |
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| T |
10396026 |
tcagctctgaaaaacaaaaaacagtcatctgcaaataggaggtgagaaatagtaggtgca |
10396085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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