View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_high_17 (Length: 396)
Name: NF19723_high_17
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 60 - 388
Target Start/End: Original strand, 13769778 - 13770095
Alignment:
| Q |
60 |
ctatataattcaattgacaaaaccggaattcataagctagataagagcttgccttagaccaatttttcaactctgatacatacacatgccttggcattct |
159 |
Q |
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| T |
13769778 |
ctatataattcaattgacaaaaccggaattcataagttagataagagcttgccttagaccaatttttcaactctgatacatacacatgcctttgcattct |
13769877 |
T |
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| Q |
160 |
gaaaccagccacggaaacactactgcagccctccataacacgatttcgacgcaaccaactcaatcttgaaactcgtccttagcaaaaatatttccatcat |
259 |
Q |
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| T |
13769878 |
gaaaccagccacggaaacactactgcagccctccataacacgacttcgacgcaaccaactcaatcttgaaactcgtccatagcaaaaatatttccatcat |
13769977 |
T |
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| Q |
260 |
taattacaatttttcatcacattttctcttcaaactctttcataaaaaacagacacaaacaacattatccaaatcctaacaaaccccaaaaataacatgt |
359 |
Q |
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| T |
13769978 |
tactta-----------cacattttctcttcaaactctttcataaaaaacagacacaaacaacattatccaaatcctaacaaaccccaaaaataacatgt |
13770066 |
T |
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| Q |
360 |
tcataactcaaacgaacaacctcctttgc |
388 |
Q |
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| T |
13770067 |
tcataactcaaacgaacaacctcctttgc |
13770095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 13755833 - 13755931
Alignment:
| Q |
242 |
caaaaatatttccatcattaattacaatttttcatcacattttctcttcaaactctttcataaaaaacagacacaaacaacattatccaaatcctaaca |
340 |
Q |
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| T |
13755833 |
caaaaatatttccatcattacttacactttttcatcacattttctcttcaaactctttcataaaaaacagacacaaacaacattatccaaatcctaaca |
13755931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 13755927 - 13755963
Alignment:
| Q |
352 |
taacatgttcataactcaaacgaacaacctcctttgc |
388 |
Q |
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| T |
13755927 |
taacatgttcataactcaaacgaacaacatcctttgc |
13755963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13769666 - 13769701
Alignment:
| Q |
1 |
gttgtgtccggtgtctgtgctccataacttctaaaa |
36 |
Q |
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| T |
13769666 |
gttgcgtccggtgtctgtgctccataacttctaaaa |
13769701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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