View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_high_23 (Length: 346)
Name: NF19723_high_23
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 43061809 - 43062131
Alignment:
| Q |
16 |
ataacatgtttaacaatgaatgaataaacaaataacaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaataaaattcta |
115 |
Q |
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| T |
43061809 |
ataacatgtttaacaatgaatgaataaacaaataaaaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaataaaattcta |
43061908 |
T |
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| Q |
116 |
cgtatgcaaataccgtaggtagaacctagaacacaacattgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattattgtttaatttcaatgg |
215 |
Q |
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| T |
43061909 |
cgtatgcaaataccgtaggtagaacctagaacacaacattgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattattgtttgatttcaatgg |
43062008 |
T |
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| Q |
216 |
aactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagataccataa |
315 |
Q |
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| T |
43062009 |
aactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagataccataa |
43062108 |
T |
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| Q |
316 |
actccaacactcttgcctttgct |
338 |
Q |
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| T |
43062109 |
actccaacactcttgtctttgct |
43062131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 43054751 - 43054871
Alignment:
| Q |
209 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
308 |
Q |
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| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
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| Q |
309 |
accataaactccaacactctt |
329 |
Q |
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| T |
43054851 |
atcataaactccaacattctt |
43054871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 43049217 - 43049344
Alignment:
| Q |
209 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
308 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||| | |||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
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| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
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| Q |
309 |
accataaactccaacactcttgcctttg |
336 |
Q |
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| T |
43049317 |
atcataaacttcatcactcttgtctttg |
43049344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 43024145 - 43024186
Alignment:
| Q |
288 |
gaagtagagcttcacatagataccataaactccaacactctt |
329 |
Q |
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| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactctt |
43024186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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