View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19723_high_26 (Length: 329)
Name: NF19723_high_26
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 35853945 - 35854226
Alignment:
| Q |
20 |
ttcttattcagtggaacacttctgtttgaactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35853945 |
ttcttattcagtggaacacttctgtttgaactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatgtt |
35854044 |
T |
|
| Q |
120 |
t--ctgtcaaaaaacttttgatcgaagagttcaagcaattttggctttaaagcatttttcaaatagcaaataaccataaacaaacatgaactaagatgaa |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35854045 |
tttctgtcaaaaaacttttgatcgaagagttcaagcaattttggcttcaaagcatttttcaaatagcaaataaccataaacaaacatgaactaagatgaa |
35854144 |
T |
|
| Q |
218 |
ttatttcagtttattgctaacaagattatacatattccaagggaaaaagcaacatatcacagacagtacatagatcccaaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
35854145 |
ttatttcagtttattgctaacaagattatacatattccaagggaaaaaacaacatatcacagacaatacatagatcccaaca |
35854226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 35858516 - 35858745
Alignment:
| Q |
20 |
ttcttattcagtggaacacttctgtttgaactaggcttgggatggatggctcaactcattcaaccctacccataatggtatttatttgaactagtatgtt |
119 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||||| ||||| ||| |||||| | |||||||||||| ||| || | ||||||||||||||||||||||||||| |
|
|
| T |
35858516 |
ttctaattcagttgaaaacttcagtttgaaataggcctggcatggatagttcaactcattcagcccaacagaaaatggtatttatttgaactagtatgtt |
35858615 |
T |
|
| Q |
120 |
t--ctgtcaaaaaacttttgatcgaagagttcaagcaattttggctttaaagcatttttcaaatagcaaataaccataaacaaacatgaactaagatgaa |
217 |
Q |
| |
|
| |||| |||||||||| ||| |||||||||||||||||||| || ||||| ||||| ||||||||||||| || |||||||||||| || ||||||| |
|
|
| T |
35858616 |
tttctgtgaaaaaactttcaatcaaagagttcaagcaattttggattaaaagcgttttttaaatagcaaataatcagaaacaaacatgacctgagatgaa |
35858715 |
T |
|
| Q |
218 |
ttatttcagtttattgctaacaagattata |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
35858716 |
ttatttcagtttattgctatcaagattata |
35858745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 35727545 - 35727496
Alignment:
| Q |
183 |
gcaaataaccataaacaaacatgaactaagatgaattatttcagtttatt |
232 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
35727545 |
gcaaataatcaaaaccaaacatgaactaagatgaaatatttcagtttatt |
35727496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 35748330 - 35748233
Alignment:
| Q |
70 |
tcaactcattcaaccctacccataatggtatttatttgaactagta---tgtttctgtcaaaaaacttttgatcgaagagttcaagcaattttggctt |
164 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| |||||||||||| | ||||| | ||||||||| | ||| || ||||| |||||||||||||| |
|
|
| T |
35748330 |
tcaactcattcaaccttacacaaaatggtattggtttgaactagtatattttttctattaaaaaacttctaatcaaatagttctagcaattttggctt |
35748233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University