View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_high_33 (Length: 283)
Name: NF19723_high_33
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 35069511 - 35069740
Alignment:
| Q |
49 |
ataaaaatatttactcttctgaagatagtcttgtgagaacactaaagagaaatcaaaccagctcatcgaaattgtcatcgaaaagaatcaaacttaagac |
148 |
Q |
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| T |
35069511 |
ataaaaatatttactcttccgaatatagtcttgtgagaatactaaagagaagtcaaaccagctcatcgaaattgtcatcgaaaagaatcaaacttaagac |
35069610 |
T |
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| Q |
149 |
ttgagaaaggggtacatttcaaaatcttaaatcaacatcataggaacaacccaaatagcttaatatctatacgcattaattacaaatatttttccttaac |
248 |
Q |
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| T |
35069611 |
ttgagaaaggggtacatttcaaaatcttaaatcaacatcataggaacaacccaaatagcttaatatctatactcattaattacaaatatttttccttaac |
35069710 |
T |
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| Q |
249 |
tctttcccttaggaaaatgttacatgaacac |
279 |
Q |
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| T |
35069711 |
tcttt-ccttaggaaaatgttacatgaacac |
35069740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 35095856 - 35095968
Alignment:
| Q |
136 |
tcaaacttaagacttgagaaaggggtacatttcaaaatcttaaatcaacatcataggaacaacccaaatagctta--atatctatacgcattaattacaa |
233 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| || |||||| ||||| |||| || |
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| T |
35095856 |
tcaaacttaagacttgagaaaggggtacacttcaaaatcttaaatcaacatcaaaagaacaatccaaatagcttagtatctctataagcattgattaaaa |
35095955 |
T |
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| Q |
234 |
atatttttcctta |
246 |
Q |
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| T |
35095956 |
atatttttcctta |
35095968 |
T |
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