View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19723_high_40 (Length: 246)
Name: NF19723_high_40
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 32861191 - 32861315
Alignment:
| Q |
101 |
attggcaattctgacgttggtgtggttaatgccagcatgtccaccaatgggagaggagtctggatttccagaaaagtctgctgttctgtacatggtagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32861191 |
attggcaattctgacgttggtgtggttaatgccagcatgtccaccaatgggagaggagtctggatttccagaaaagtctgctgttatgtacatggtagtg |
32861290 |
T |
|
| Q |
201 |
aggttcagtagcaattccttgcaag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32861291 |
aggttcagtagcaattccttgcaag |
32861315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 32861128 - 32861188
Alignment:
| Q |
12 |
aggagcacagaggccttagcttgttaacgtgggatgtattcagagacaagcttgtgaatat |
72 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32861128 |
aggaacacagaggccttagcttgttaacatgggatgtattcagagacaagcttgtgaatat |
32861188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University