View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19723_high_45 (Length: 239)
Name: NF19723_high_45
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 48922750 - 48922513
Alignment:
| Q |
1 |
ttagcacttgaacatgtatatatttgttcaccaataatctaatcattatcaatgtaaacttcgttaattagtgtccattatatatgaaatgcttatctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48922750 |
ttagcacttgaacatgtatatatttgttcaccaataatctaatcattatcaatgtaaacttcgttaattagtgtccattatatatgaaatgcttatctag |
48922651 |
T |
|
| Q |
101 |
aaatcccttttgcatttattatctctttccttatacaactctgataaacttgtaggattctatctcaagatttttgttacatgaaacaaagctcctgctt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48922650 |
aaatcccttctgcatttattatctctttccttttacaactctgataaacttgtaggattctatctcaagatttttgttacatgaaacaaagctcctgctt |
48922551 |
T |
|
| Q |
201 |
tgtagtttgtatgacgcttcatgaaaggatcgaattca |
238 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48922550 |
tgtagtttgtatgacgcttcatggaaggatcgaattca |
48922513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University