View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_high_47 (Length: 237)
Name: NF19723_high_47
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5969648 - 5969868
Alignment:
| Q |
1 |
tgtagcactataaaaagtcattattcttcttccttttatctccctacaatgtttaagtctcacatcttcttccttgagggcatattgtcaatttgtcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5969648 |
tgtagcactataaaaagtcattattcttcttccttttatctccctacaatgttttagtctcacatcttcttccttgagggcatattgtcaatttgtcacg |
5969747 |
T |
|
| Q |
101 |
ggtataacaatccatccataaccacaaatttataaaccatggtcaacagcagcacctaaaatcaaatcaatagaaataaaagtgatacagacacataaaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5969748 |
ggtataacaaaacatccataaccacaaatttataaaccatggtcaacagcagcacctaaaatcaaatcaatagaaataaaagtgatacagacacataaaa |
5969847 |
T |
|
| Q |
201 |
gtaaaactccaacatacaaag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5969848 |
gtaaaactccaacatacaaag |
5969868 |
T |
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