View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_high_6 (Length: 627)

Name: NF19723_high_6
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19723_high_6
NF19723_high_6
[»] chr5 (15 HSPs)
chr5 (21-608)||(26312914-26313514)
chr5 (127-215)||(11931973-11932062)
chr5 (127-213)||(21488341-21488427)
chr5 (137-213)||(22101922-22101998)
chr5 (127-215)||(29299361-29299449)
chr5 (159-210)||(18718274-18718325)
chr5 (127-213)||(1138276-1138361)
chr5 (128-215)||(5002196-5002283)
chr5 (149-212)||(32452287-32452350)
chr5 (119-217)||(12094292-12094389)
chr5 (127-217)||(15968315-15968404)
chr5 (127-217)||(22731313-22731402)
chr5 (129-213)||(14913164-14913248)
chr5 (121-217)||(27488345-27488440)
chr5 (119-215)||(36434734-36434830)
[»] chr8 (13 HSPs)
chr8 (131-215)||(35149724-35149808)
chr8 (125-215)||(5031466-5031556)
chr8 (129-215)||(8803234-8803320)
chr8 (127-213)||(1223127-1223213)
chr8 (129-215)||(7693089-7693175)
chr8 (125-215)||(42123022-42123114)
chr8 (122-186)||(24822808-24822872)
chr8 (137-215)||(34711095-34711173)
chr8 (173-213)||(40651273-40651313)
chr8 (129-215)||(8793725-8793811)
chr8 (125-215)||(10839765-10839855)
chr8 (127-217)||(22429539-22429628)
chr8 (128-213)||(8453653-8453737)
[»] chr4 (24 HSPs)
chr4 (128-215)||(3162900-3162987)
chr4 (121-215)||(696406-696500)
chr4 (121-215)||(764704-764798)
chr4 (128-215)||(9894630-9894717)
chr4 (137-214)||(23226964-23227041)
chr4 (137-215)||(4386150-4386228)
chr4 (133-215)||(30191906-30191988)
chr4 (122-215)||(45828471-45828564)
chr4 (127-215)||(14859709-14859797)
chr4 (127-215)||(48361056-48361144)
chr4 (125-215)||(17284791-17284883)
chr4 (134-215)||(33010685-33010766)
chr4 (127-215)||(28020533-28020621)
chr4 (125-213)||(41116564-41116652)
chr4 (137-213)||(44061446-44061521)
chr4 (127-215)||(48195894-48195982)
chr4 (153-215)||(28460776-28460838)
chr4 (127-216)||(55190722-55190810)
chr4 (131-215)||(47943735-47943819)
chr4 (127-215)||(53225700-53225788)
chr4 (128-215)||(36132691-36132778)
chr4 (127-215)||(29686456-29686544)
chr4 (174-214)||(35429830-35429870)
chr4 (131-215)||(43117910-43117994)
[»] chr3 (20 HSPs)
chr3 (129-215)||(35099111-35099197)
chr3 (127-213)||(36985160-36985246)
chr3 (127-213)||(37010599-37010685)
chr3 (134-215)||(44518047-44518128)
chr3 (147-203)||(25954090-25954146)
chr3 (153-216)||(7136811-7136874)
chr3 (129-215)||(40460351-40460438)
chr3 (128-212)||(12747756-12747840)
chr3 (131-215)||(23223014-23223097)
chr3 (484-543)||(1334025-1334084)
chr3 (147-213)||(25910249-25910315)
chr3 (122-204)||(43343440-43343522)
chr3 (127-216)||(19649634-19649723)
chr3 (134-215)||(43448969-43449050)
chr3 (129-201)||(47977928-47978000)
chr3 (134-215)||(51723389-51723470)
chr3 (131-215)||(53357344-53357429)
chr3 (431-463)||(1334357-1334389)
chr3 (127-215)||(21662890-21662978)
chr3 (128-204)||(45010817-45010893)
[»] chr7 (18 HSPs)
chr7 (127-215)||(28677373-28677461)
chr7 (127-213)||(40142831-40142917)
chr7 (147-213)||(45533254-45533320)
chr7 (131-215)||(8566137-8566221)
chr7 (147-215)||(34117995-34118063)
chr7 (127-215)||(36245432-36245520)
chr7 (128-215)||(2610192-2610279)
chr7 (127-213)||(10007634-10007720)
chr7 (137-215)||(9979856-9979934)
chr7 (131-191)||(41863661-41863721)
chr7 (136-215)||(4925904-4925983)
chr7 (126-213)||(30869244-30869331)
chr7 (174-215)||(6838426-6838467)
chr7 (127-210)||(47942898-47942981)
chr7 (127-210)||(47948328-47948411)
chr7 (125-203)||(11668083-11668161)
chr7 (147-215)||(39153343-39153411)
chr7 (132-204)||(48082808-48082880)
[»] chr6 (9 HSPs)
chr6 (128-215)||(30627828-30627915)
chr6 (127-215)||(2230405-2230493)
chr6 (131-211)||(17265781-17265861)
chr6 (161-215)||(9077624-9077678)
chr6 (129-213)||(28630759-28630843)
chr6 (128-215)||(10283350-10283437)
chr6 (131-213)||(5483869-5483951)
chr6 (128-212)||(3064888-3064972)
chr6 (149-215)||(28863346-28863412)
[»] chr2 (18 HSPs)
chr2 (133-215)||(38983055-38983137)
chr2 (127-213)||(30761382-30761468)
chr2 (127-213)||(34447561-34447647)
chr2 (138-215)||(32457269-32457346)
chr2 (137-215)||(29988906-29988984)
chr2 (127-215)||(7943495-7943584)
chr2 (128-213)||(20555263-20555348)
chr2 (127-215)||(12873727-12873815)
chr2 (133-215)||(4410833-4410916)
chr2 (144-215)||(28014294-28014365)
chr2 (122-213)||(28248991-28249082)
chr2 (127-216)||(9152434-9152523)
chr2 (176-215)||(10204979-10205018)
chr2 (127-213)||(43714032-43714117)
chr2 (128-213)||(5109368-5109453)
chr2 (128-213)||(38554516-38554601)
chr2 (173-213)||(920464-920504)
chr2 (132-212)||(30758779-30758858)
[»] scaffold0028 (1 HSPs)
scaffold0028 (125-213)||(71907-71996)
[»] chr1 (17 HSPs)
chr1 (151-215)||(37178938-37179002)
chr1 (133-211)||(7375529-7375607)
chr1 (147-215)||(15342961-15343029)
chr1 (127-215)||(26760229-26760317)
chr1 (128-194)||(47912892-47912957)
chr1 (125-215)||(50155354-50155444)
chr1 (125-203)||(38040344-38040422)
chr1 (129-215)||(49944839-49944925)
chr1 (137-213)||(640536-640611)
chr1 (135-215)||(23923562-23923642)
chr1 (127-215)||(26924217-26924305)
chr1 (130-214)||(38737988-38738072)
chr1 (157-215)||(6661548-6661606)
chr1 (131-213)||(37515148-37515230)
chr1 (149-215)||(44939122-44939188)
chr1 (132-201)||(24305735-24305804)
chr1 (122-186)||(49184238-49184302)
[»] scaffold0123 (1 HSPs)
scaffold0123 (127-215)||(28145-28233)
[»] scaffold0236 (1 HSPs)
scaffold0236 (127-213)||(16709-16792)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 608
Target Start/End: Complemental strand, 26313514 - 26312914
Alignment:
Q  21 taagatttatgtaaaggcattggtttctccgatataggattcccgtcgatgtattgggaattcctcaattgactcgtcaatatttatgcaaattaatctg 120  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26313514 taagatttatgtaaaggttttggtttctccgatataggattcccgtcgatgtattgggaattcctcaattgactcgtcaatatttatgcaaattaatctg 26313415  T
Q  121 gtatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaacaaa 220  Q
    |||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||  |||||||| |||||||||||  ||||||||||| |||    
T  26313414 gtatttcctccgttcctatttttaagaaaaaatttactttttaaatttattatgtaattaacatatcttgtttacaatatagatcaaatacatcaaaaaa 26313315  T
Q  221 gttaaatgtttcttgt-aaataactnnnnnnnn----tttgaacttgttatttt--atttcaaaccaaaatttgaagttt-------gaggtcattatga 306  Q
    || |||||||| || | ||||||||            |||||||||||||||||  ||||||||||||||||||||||||       |||||||||||||    
T  26313314 gtcaaatgtttttttttaaataactaaaaaacaattttttgaacttgttattttttatttcaaaccaaaatttgaagtttaaagtttgaggtcattatga 26313215  T
Q  307 atgtgtaacatcacaactatgtcagaaccccacaaaccaacaataattttcaaagtaaaaaccacaacaaaaagaaacatgtgaaaatcagtttgnnnnn 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         
T  26313214 atgtgtaacatcacaactatgtcagaaccccacaaaccaacaataattttcaaagttaaaaccacaacaaaaagaaacatgtgaaaatcagtttgttttt 26313115  T
Q  407 nnnnnnnnggctcttcaagatgtcagtgaaaatctcagagtcaacgttttcattgttcatcagtttatgtgttaactcaaggtctttttgttaaacaaga 506  Q
            ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  26313114 ctttttttggctcttcaagatgttagtgaaaatctcagagtca-cgttttcattgttcatcggtttatgtgttaactcaaggtctttttgtaaaacaaga 26313016  T
Q  507 tggctatgtggagggtaattggatagattatcagcagacatgttggtggcacaaaccctctcggcaattggcaagtcaattggaacatttgcgcagccaa 606  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26313015 tggctatgtggagggtagttggatagattatcagcagacatgttggtggcacaaaccctctcggcaattggcaagtcaattggaacatttgcgaagccaa 26312916  T
Q  607 gg 608  Q
    ||    
T  26312915 gg 26312914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 11931973 - 11932062
Alignment:
Q  127 cctccggtcctatttttaataaaaaa-ttgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| |||||| |||| |||||| ||| ||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  11931973 cctccggtcctatttataagaaaaaaattgactttttagattcattgtgtaattaatgtatcttgtctaaaatatagaccaaatacatca 11932062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 21488427 - 21488341
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||| |||||||| ||| ||||| || |||||||||| | |||||||||||||||||| ||||||| ||||||||| ||||||||    
T  21488427 cctccgatcctatttataagaaaaagttaattttttaaactcattatgtaattaatgtattttgtctagaatatagaccaaatacat 21488341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 22101922 - 22101998
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||| ||| ||||| ||||||||||| ||| ||| |||||||||||||||||||||| ||||||||  ||||||||    
T  22101922 tatttataagaaaaatttgattttttagattcattgtgtaattaatgtatcttgtctaaaatatagatcaaatacat 22101998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 29299361 - 29299449
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| ||||| ||||||||||| ||| |||  || ||| |||||| ||||||| |||||||||  |||||||||    
T  29299361 cctccggtcctatttataagaaaaatttgattttttagattcattgagtgattgatgtattttgtctaaaatatagaccgaatacatca 29299449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 18718274 - 18718325
Alignment:
Q  159 ttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaata 210  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  18718274 ttttaaatttattgagtaattaatgtatcttgtctagaatatagaccaaata 18718325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 1138361 - 1138276
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||| || ||||| ||| ||||||||||||||||||||| ||||  |||||||||||||| | ||| || |||||| ||||||||    
T  1138361 cctccgatcatatttataagaaaaaattgattttttaaattcattaaataattaatgtatctagactagaa-atagaccaaatacat 1138276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 5002283 - 5002196
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| |||||||| ||| ||||  || | |||||| |||||||  |||||| |||||||||||||| ||||||||  ||||||||||    
T  5002283 ctccgctcctatttataagaaaatttttactttttagatttattgagtaattgatgtatcttgtctaaaatatagatcaaatacatca 5002196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 32452350 - 32452287
Alignment:
Q  149 aaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaataca 212  Q
    |||||||| |||||| ||| |||  |||||||||||| |||||||| ||||||||| |||||||    
T  32452350 aaaattgactttttatattcattgcgtaattaatgtagcttgtctagaatatagaccaaataca 32452287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 12094389 - 12094292
Alignment:
Q  119 tggtatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaac 217  Q
    ||||||||||||| || |||||| ||| ||| |||| |||||||||| | ||| | |||||  ||||||| ||||| ||||||||| | ||||||||||    
T  12094389 tggtatttcctcctgttctatttataagaaacaattaattttttaaa-tcattgtttaattgttgtatctggtctaaaatatagaccacatacatcaac 12094292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 15968315 - 15968404
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaac 217  Q
    ||||||||||||||| ||| ||||| || |||||||| ||| |||   |||||||||||||| | ||| || |||||| ||||||||||||    
T  15968315 cctccggtcctatttataagaaaaagttaattttttagattcattcaataattaatgtatctagcctagaa-atagaccaaatacatcaac 15968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 22731402 - 22731313
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaac 217  Q
    ||||||||||||||| ||| ||||| || |||||||| ||| ||||  ||||||||||| || | ||| || |||||| ||||||||||||    
T  22731402 cctccggtcctatttataagaaaaagttaattttttagattcattaaataattaatgtacctagcctagaa-atagaccaaatacatcaac 22731313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 14913248 - 14913164
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||| |||||||| ||| ||||| ||||||||||||||| |||  ||||||||| ||| |  | || ||||||||| ||||||||    
T  14913248 tccgatcctatttataagaaaaatttgattttttaaattcattgagtaattaatatatttgatataaaatatagaccaaatacat 14913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 27488345 - 27488440
Alignment:
Q  121 gtatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaac 217  Q
    ||||| ||||||||||||||| ||| |||||||| |||||||| ||| |||   ||||| |||||||| | ||| || |||||| ||||| ||||||    
T  27488345 gtattacctccggtcctatttataagaaaaaattaattttttagattcattcaataattgatgtatctagcctagaa-atagaccaaatatatcaac 27488440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 36434830 - 36434734
Alignment:
Q  119 tggtatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||| ||||||  ||||| ||| ||||| || | |||||| ||| |||| |||||| |||||||||||||| |||||| || ||||| ||||    
T  36434830 tggtacttcttccggttttatttataagaaaaatttaactttttagattcattaagtaattgatgtatcttgtctaaaatataaaccaaatatatca 36434734  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 35149808 - 35149724
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  35149808 cggtcctatttataagaaaaagttgattttttagatttattgtgtaattaatgtatcttgtctagaatatagaccaaatacatca 35149724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 5031466 - 5031556
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||||| ||| ||||| || | |||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||    
T  5031466 ttcctccggtcctatttataagaaaaatttaactttttaaattcattaagtaattgatgtatcttgtctagaatatagactaaatacatca 5031556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 8803234 - 8803320
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||| |||||  || ||||| || | |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  8803234 tccggtcatatttacaagaaaaagttaactttttatatttattatgtaattaatgtatcttgtctagaatatagaccaaatacatca 8803320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 1223127 - 1223213
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||| ||||| ||| |||||| ||| |||||| ||| ||| |||||||||||||||||||| | ||||||||| ||||||||    
T  1223127 cctccggtcatatttataagaaaaaagtgactttttagattcattgtgtaattaatgtatcttgtcaaaaatatagaccaaatacat 1223213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 7693175 - 7693089
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||| ||| |||||||||| |||||| ||| |||  ||||||||||||| | || || ||||||||||||||||||||    
T  7693175 tccggtcctatttataagaaaaaattgactttttagattcattgagtaattaatgtatttggtataaaatatagactaaatacatca 7693089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 42123114 - 42123022
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaa--ttgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| ||||| ||| ||||||  |||| |||||| ||| |||  ||||||||||||||||||||| |||||| || ||||||||||    
T  42123114 ttcctccggtcttatttataaaaaaaaaaattgactttttagattcattgagtaattaatgtatcttgtctagaatatataccaaatacatca 42123022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 24822872 - 24822808
Alignment:
Q  122 tatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtat 186  Q
    |||| ||||||||||||||| ||| |||||||||| |||||| ||||||| | ||||||||||||    
T  24822872 tattccctccggtcctatttataagaaaaaattgactttttagatttattgtataattaatgtat 24822808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 34711095 - 34711173
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||| |||||||||| |||||| ||| |||  |||||| |||||| ||||||| |||||| |||||||||||||    
T  34711095 tatttataaaaaaaaattgactttttagattcattgagtaattgatgtattttgtctaaaatataaactaaatacatca 34711173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 40651273 - 40651313
Alignment:
Q  173 tgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  40651273 tgtaattaatgtatcttgtctataatataaactaaatacat 40651313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 8793725 - 8793811
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||| |||||| |||  |||| ||||| ||||| ||| |||  |||||| |||||| | ||||| ||||||||||||||||||||    
T  8793725 tccggttctatttataagtaaaagttgatattttagattcattgagtaattgatgtatttggtctataatatagactaaatacatca 8793811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 10839765 - 10839855
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||| ||||||||| ||| |||||||||| |||||| ||| |||   |||||||||||  | || || ||||||||| ||||||||||    
T  10839765 ttcctccagtcctatttataagaaaaaattgactttttagattcattgaataattaatgtacttggtatagaatatagaccaaatacatca 10839855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 22429539 - 22429628
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaac 217  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||   ||||||||||| || | ||| || |||||| ||||||||||||    
T  22429539 cctccggtcctatttataagaaaaagttaattttttagatttattcaataattaatgtacctagcctagaa-atagaccaaatacatcaac 22429628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 8453737 - 8453653
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||| |||||||| ||| ||||| ||||||||||| ||  |||  |||||| || ||||||||||| |||||||| |||||||||    
T  8453737 ctccgatcctatttataagaaaaatttgattttttagatacattgagtaattgatatatcttgtctagaatataga-taaatacat 8453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 3162900 - 3162987
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||||| ||| |||||||||| |||||||||| ||| |||||||||| ||||||||||| |||||||||| |||||||||    
T  3162900 ctccggtcttatttataagaaaaaattgactttttaaattcattgtgtaattaatatatcttgtctagaatatagactcaatacatca 3162987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 696500 - 696406
Alignment:
Q  121 gtatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||||||||||||||| ||| ||||| || |||||| | ||||||||| ||||||||||||||||| || |||||||||||||| |||||    
T  696500 gtattccctccggtcctatttataagaaaaagttaatttttaagatttattatataattaatgtatcttgtttagaatatagactaaatccatca 696406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 764798 - 764704
Alignment:
Q  121 gtatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||||||||||||||| ||| ||||| || |||||| | ||||||||| ||||||||||||||||| || |||||||||||||| |||||    
T  764798 gtattccctccggtcctatttataagaaaaagttaatttttaagatttattatataattaatgtatcttgtttagaatatagactaaatccatca 764704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 9894630 - 9894717
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||||||||| ||| ||||| |||| |||||| ||| ||||||| |||||||||||||||||| ||||||||  ||||||||||    
T  9894630 ctccggtcctatttataagaaaaagttgactttttagattcattatgttattaatgtatcttgtctagaatatagatcaaatacatca 9894717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 23226964 - 23227041
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatc 214  Q
    ||||| ||| |||||||||| |||||| ||| |||||||||||||||||||||||||| || |||||| |||||||||    
T  23226964 tatttataagaaaaaattgactttttagattcattatgtaattaatgtatcttgtctaaaaaatagaccaaatacatc 23227041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 4386150 - 4386228
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||| ||||| |||| |||||||||| |||| |||||| |||||| || |||||||||||||||||||||||||    
T  4386150 tatttataagaaaaatttgactttttaaattcattaagtaattgatgtattttatctacaatatagactaaatacatca 4386228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 30191906 - 30191988
Alignment:
Q  133 gtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||| ||| ||||||||||||||||| ||| |||  |||||| |||||| ||||||| ||||||||| ||||||||||    
T  30191906 gtcctatttataagaaaaaattgattttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatca 30191988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 45828564 - 45828471
Alignment:
Q  122 tatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||| ||| ||||||||||| ||| ||||||||||||||||| ||| |||  ||||||||||||| | ||||| |||||| || ||||||||||    
T  45828564 tattcccttcggtcctatttataagaaaaaattgattttttagattcattgagtaattaatgtatttggtctataatataaaccaaatacatca 45828471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 14859709 - 14859797
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||| ||| |||| ||||||||| ||||| ||||| ||| |||  | |||| ||||||||||||||||||||| |||||||||||||    
T  14859709 cctccgatccaatttataataaaaatttgatattttagattcattgagaaattgatgtatcttgtctacaatatatactaaatacatca 14859797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 48361056 - 48361144
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| ||||| |||| |||||| ||| |||  |||||| |||||| ||||||| ||||||||| ||||||||||    
T  48361056 cctccggtcctatttataagaaaaatttgactttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatca 48361144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 17284883 - 17284791
Alignment:
Q  125 ttcctccggtcctattttta--ataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||||| ||  | |||||| | | |||||||||||||| | ||||| |||||||||||||| ||||||||| | ||||||||    
T  17284883 ttcctccggtcctatttatacaaaaaaaaaattactttttaaatttattgtataattgatgtatcttgtctagaatatagaccacatacatca 17284791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 33010685 - 33010766
Alignment:
Q  134 tcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||| ||||||||||||||||| ||| ||| |||||||||| ||| |||| || |||||| | |||||||||||    
T  33010685 tcctatttataagaaaaaattgattttttagattaattgtgtaattaatatattttgtttagaatatatattaaatacatca 33010766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 28020621 - 28020533
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||| | ||| ||| ||||| |||| ||||||||||||||| ||||||||||||| | || || ||||||||| ||||| ||||    
T  28020621 cctccggtcatttttataagaaaaagttgactttttaaatttattaagtaattaatgtatttagtatagaatatagaccaaataaatca 28020533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 41116564 - 41116652
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||||| ||| ||||| || | |||||| ||| |||  |||||| ||||||||| |||| ||||||||| ||||||||    
T  41116564 ttcctccggtcctatttataagaaaaatttaactttttagattcattgagtaattgatgtatcttatctaaaatatagaccaaatacat 41116652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 44061521 - 44061446
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||| ||| ||||||| ||||||| ||||| ||| |||||||| ||||||||||||| ||||||||| ||||||||    
T  44061521 tatttataagaaaaaatcgattttt-aaattcattgtgtaattagtgtatcttgtctagaatatagaccaaatacat 44061446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 48195894 - 48195982
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||| |||||||||| ||| |||||| | | |||||||||| |||  |||||| | |||||||||||| ||||||||| ||||||||||    
T  48195894 cctctggtcctatttataagaaaaaactaactttttaaattcattgagtaattgacgtatcttgtctagaatatagaccaaatacatca 48195982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 28460776 - 28460838
Alignment:
Q  153 ttgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| ||| |||||||||||||| ||||||||    ||||||||||||||||||||    
T  28460776 ttgattttttagattcattatgtaattaatttatcttgttgtaaatatagactaaatacatca 28460838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 55190810 - 55190722
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaa 216  Q
    ||||||||||||||| ||| ||||||||||||||||| ||| |||   ||||| |||||||| | ||| || |||||| |||||||||||    
T  55190810 cctccggtcctatttataagaaaaaattgattttttatattcattcaataattgatgtatctagcctagaa-atagaccaaatacatcaa 55190722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 47943735 - 47943819
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| ||  |||||||||| |||||| ||| |||  ||||||||||||  | || || ||||||||||||||||||||    
T  47943735 cggtcctatttatatgaaaaaattgactttttagattaattgagtaattaatgtacttggtataaaatatagactaaatacatca 47943819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 53225788 - 53225700
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| |||||||||| |||||| ||| |||   |||||||||||| | || || ||| ||||| ||||||||||    
T  53225788 cctccggtcctatttataagaaaaaattgactttttagattcattgaataattaatgtatttggtatagaatgtagaccaaatacatca 53225700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 36132778 - 36132691
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||||| ||| |||||||||| |||| | ||  |||  ||| || |||||||||||||  ||||||||||||||||||||    
T  36132778 ctccggtcttatttataagaaaaaattgacttttaagatacattgagtagttgatgtatcttgtcttgaatatagactaaatacatca 36132691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 29686544 - 29686456
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||||||  || ||| ||| |||| |||||||||||| ||| | |||||||||||| ||||    ||||||||||| ||||||||    
T  29686544 cctccggtccttattataagaaacaattaattttttaaattcattgtataattaatgtatattgttataaatatagactagatacatca 29686456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 35429870 - 35429830
Alignment:
Q  174 gtaattaatgtatcttgtctacaatatagactaaatacatc 214  Q
    |||||| |||||||||||||| ||||||||| |||||||||    
T  35429870 gtaattgatgtatcttgtctagaatatagaccaaatacatc 35429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 43117994 - 43117910
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||| |||||| ||| ||||||||||||||||| ||| |||   ||||| |||||| | || || ||||||||| ||||||||||    
T  43117994 cggttctatttataagaaaaaattgattttttacattcattgaataattgatgtatttggtataaaatatagaccaaatacatca 43117910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 35099197 - 35099111
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||| ||| ||||| ||||  ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||    
T  35099197 tccggtcctatttataagaaaaagttgaccttttaaatttattgtgtaattaatatatcttgtctagaatatagaccaaatacatca 35099111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 36985160 - 36985246
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||| ||| ||||  || |||||| | ||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  36985160 cctccggtcctatttataagaaaatgttaatttttaagatttattgtataattaatgtatcttgtttagaatatagactaaatacat 36985246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 37010599 - 37010685
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||| ||| ||||  || |||||| | ||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  37010599 cctccggtcctatttataagaaaatgttaatttttaagatttattgtataattaatgtatcttgtttagaatatagactaaatacat 37010685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 44518047 - 44518128
Alignment:
Q  134 tcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||| ||||  |||| |||||| ||| |||  ||||||||||||||||||||| ||||||||| ||||||||||    
T  44518047 tcctatttataagaaaactttgactttttagattcattgagtaattaatgtatcttgtctaaaatatagaccaaatacatca 44518128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 25954146 - 25954090
Alignment:
Q  147 aaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatataga 203  Q
    |||||| |||||||||||||| |||  ||||||||||||||||||||| ||||||||    
T  25954146 aaaaaaatgattttttaaattcattgagtaattaatgtatcttgtctagaatataga 25954090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 7136874 - 7136811
Alignment:
Q  153 ttgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaa 216  Q
    |||| ||||||||||||||| |||||||||||||||| | || ||||||||| ||| |||||||    
T  7136874 ttgaatttttaaatttattaagtaattaatgtatcttctatagaatatagaccaaacacatcaa 7136811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 40460351 - 40460438
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaa-tgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||| ||||| ||| |||||||| | |||||| ||| ||| ||||||||| |||||||||| || ||||||||| ||||||||||    
T  40460351 tccggtcttatttataagaaaaaattaactttttagattcattgtgtaattaaatgtatcttgtttaaaatatagaccaaatacatca 40460438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 12747840 - 12747756
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaataca 212  Q
    |||||||||||||| ||| ||||||||||||||||| ||| ||   |||||| |||||| | ||||| |||||| || |||||||    
T  12747840 ctccggtcctatttataagaaaaaattgattttttagattcatcgagtaattgatgtatttggtctagaatatacaccaaataca 12747756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 23223097 - 23223014
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||||| ||| ||||||||||||||| | ||| |||  |||| | |||||||||||||| ||||||||| ||||||||||    
T  23223097 cggtcatatttataagaaaaaattgattttt-agattcattgagtaactgatgtatcttgtctaaaatatagaccaaatacatca 23223014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 543
Target Start/End: Complemental strand, 1334084 - 1334025
Alignment:
Q  484 caaggtctttttgttaaacaagatggctatgtggagggtaattggatagattatcagcag 543  Q
    |||||||||||||| ||||| ||   |||||||||||||| ||||||||||||| |||||    
T  1334084 caaggtctttttgtaaaacatgacaactatgtggagggtagttggatagattatgagcag 1334025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 25910315 - 25910249
Alignment:
Q  147 aaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||| |||| ||||||||||||||  ||||||||||||| | || || ||||||||| ||||||||    
T  25910315 aaaaagttgactttttaaatttattgagtaattaatgtatttggtgtagaatatagaccaaatacat 25910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 43343440 - 43343522
Alignment:
Q  122 tatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagac 204  Q
    ||||| ||||| || ||||| ||| |||||||||| |||||| ||| |||  |||||||||||||||  |||| |||||||||    
T  43343440 tattttctccgatcatatttataagaaaaaattgactttttagattaattgcgtaattaatgtatctactctagaatatagac 43343522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 19649723 - 19649634
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaa 216  Q
    |||| ||||||||||  || ||| | ||||||||||| ||| |||  |||||| ||||||   ||||| |||||||||||||||||||||    
T  19649723 cctctggtcctatttacaagaaacatttgattttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaa 19649634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 43448969 - 43449050
Alignment:
Q  134 tcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||| ||||| ||||||||||| ||| |||  |||||| || |||||||||||  ||||| || ||||||||||    
T  43448969 tcctatttataagaaaaagttgattttttagattcattgagtaattgatatatcttgtctatgatataaaccaaatacatca 43449050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 47977928 - 47978000
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttatt-atgtaattaatgtatcttgtctacaatata 201  Q
    |||| |||||||| ||| |||||||| | |||||||||| ||| || |||||||||||||||||||| ||||||    
T  47977928 tccgatcctatttataa-aaaaaattaactttttaaattcatttatataattaatgtatcttgtctaaaatata 47978000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 51723389 - 51723470
Alignment:
Q  134 tcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||| ||||| ||||||||||| ||| |||  ||||||||||||| |  | || ||||||||||||||| ||||    
T  51723389 tcctatttataagaaaaagttgattttttagattcattgagtaattaatgtatttgatatagaatatagactaaatatatca 51723470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 53357429 - 53357344
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattat-gtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| ||| |||| ||||| |||||| |||||||   |||||| || ||||||||||| ||||||||| ||||| ||||    
T  53357429 cggtcctatttgtaagaaaacattgactttttagatttattggagtaattgatctatcttgtctagaatatagaccaaatatatca 53357344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 463
Target Start/End: Complemental strand, 1334389 - 1334357
Alignment:
Q  431 agtgaaaatctcagagtcaacgttttcattgtt 463  Q
    ||||||||||||||||||||| |||||||||||    
T  1334389 agtgaaaatctcagagtcaacattttcattgtt 1334357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 21662890 - 21662978
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| ||||| |||| |||||| ||| |||  ||||||||||||  | || || | ||||||| ||||||||||    
T  21662890 cctccggtcctatttataagaaaaagttgactttttagattcattgagtaattaatgtacttggtatagattatagaccaaatacatca 21662978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 45010893 - 45010817
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagac 204  Q
    |||||||||||||| ||| | |||||| |||||||| |||||||   ||||| |||||||| || || |||||||||    
T  45010893 ctccggtcctatttataagagaaaattaattttttagatttattgaataattgatgtatctagtttagaatatagac 45010817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 28677461 - 28677373
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||| |||||||| ||| |||||||||| |||||| |||||||  |||||| |||||||||||||| ||||||||| ||||||||||    
T  28677461 cctccgatcctatttataagaaaaaattgactttttagatttattgagtaattgatgtatcttgtctagaatatagaccaaatacatca 28677373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 40142917 - 40142831
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||| | ||| ||||||||||||||||| ||||||| | ||||||||||||||||| ||  |||||||| ||||||||    
T  40142917 cctccggtcctatgtataagaaaaaattgattttttagatttattgtataattaatgtatcttgtttaggatatagaccaaatacat 40142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 45533254 - 45533320
Alignment:
Q  147 aaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  45533254 aaaaaattgactttttagattcattatgtaattaatgtatcttgtctagaatatagaccaaatacat 45533320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 8566221 - 8566137
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| ||| ||||| ||||||||||| ||| |||  |||||| |||||||||||||| ||||||||| ||||||||||    
T  8566221 cggtcctatttataagaaaaatttgattttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatca 8566137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 34118063 - 34117995
Alignment:
Q  147 aaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| |||| |||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  34118063 aaaaagttgactttttaaattcattgtgtaattaatgtatcttgtctagaatatagaccaaatacatca 34117995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 36245520 - 36245432
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||||||||| ||| |||||||||| |||||| ||| |||  |||||| |||||||||||||| ||||||||| ||||||||||    
T  36245520 cctcctgtcctatttataagaaaaaattgactttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatca 36245432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 2610192 - 2610279
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||| |||| ||| ||||| ||||||||||||||| |||  |||||| |||||| | ||||| ||||||||||||||||||||    
T  2610192 ctccggtccgatttataagaaaaatttgattttttaaattcattgagtaattgatgtatttggtctagaatatagactaaatacatca 2610279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 10007720 - 10007634
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||| ||| ||||| |||| |||||| ||| ||| | ||||||||||||||||| || ||||||||| ||||||||    
T  10007720 cctccggtcctatttataagaaaaagttgactttttagattcattgtataattaatgtatcttgtgtagaatatagaccaaatacat 10007634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 9979934 - 9979856
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||| ||||| |||| |||||| |||||||  |||||| |||||||||||||| ||||| ||||||||||||||    
T  9979934 tatttataagaaaaatttgactttttagatttattgagtaattcatgtatcttgtctagaatattgactaaatacatca 9979856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 41863721 - 41863661
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgt 191  Q
    |||| |||||| ||| |||||||||| |||||||||| ||| |||||||||||||||||||    
T  41863721 cggttctatttataagaaaaaattgactttttaaattcattgtgtaattaatgtatcttgt 41863661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 4925904 - 4925983
Alignment:
Q  136 ctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||| ||| ||||| |||| |||||| ||| |||| |||||| ||||| |||||||| ||||||||||||||| ||||    
T  4925904 ctatttataagaaaaatttgactttttagattcattaagtaattgatgtaacttgtctaaaatatagactaaatatatca 4925983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 30869331 - 30869244
Alignment:
Q  126 tcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||| |||||||||| ||| ||||  |||| |||||| ||| |||  |||||| |||||||||||||| ||||||||| ||||||||    
T  30869331 tcctctggtcctatttataagaaaattttgactttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacat 30869244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 6838426 - 6838467
Alignment:
Q  174 gtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  6838426 gtaattaatgtatcttgtctagaatatagaccaaatacatca 6838467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 47942981 - 47942898
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaata 210  Q
    |||||| |||||||| ||| |||   |||| |||||||||||||||  |||||||||||| ||||||| |||||| | ||||||    
T  47942981 cctccgttcctatttataagaaatttttgactttttaaatttattaaataattaatgtattttgtctaaaatataaattaaata 47942898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 47948411 - 47948328
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaata 210  Q
    |||||| |||||||| ||| |||   |||| |||||||||||||||  |||||||||||| ||||||| |||||| | ||||||    
T  47948411 cctccgttcctatttataagaaatttttgactttttaaatttattaaataattaatgtattttgtctaaaatataaattaaata 47948328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 11668161 - 11668083
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatataga 203  Q
    ||||| ||||||||||| ||| ||||| |||| |||||| ||| |||   ||||| |||||||||||||| ||||||||    
T  11668161 ttccttcggtcctatttataagaaaaatttgactttttacattcattgattaattgatgtatcttgtctagaatataga 11668083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 39153411 - 39153343
Alignment:
Q  147 aaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||||| ||||||  || |||  |||||| |||||| | ||||| ||||||||||||||||||||    
T  39153411 aaaaaattgactttttagcttcattgagtaattgatgtatttggtctataatatagactaaatacatca 39153343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 48082808 - 48082880
Alignment:
Q  132 ggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagac 204  Q
    |||| ||||| ||| ||||| |||| |||||| ||| ||| ||||||||||||||| ||| || |||||||||    
T  48082808 ggtcttatttataagaaaaagttgactttttagattcattgtgtaattaatgtatcatgtgtagaatatagac 48082880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 30627828 - 30627915
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||| ||||| ||| ||||| ||||||||||| |||||||  |||||| |||||||||||||| ||||||||| ||||||||||    
T  30627828 ctccggtcttatttataagaaaaatttgattttttatatttattgagtaattgatgtatcttgtctaaaatatagaccaaatacatca 30627915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 2230493 - 2230405
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| ||||  |||| |||||| ||| |||  ||||||||||||||||||||| ||||||||| || |||||||    
T  2230493 cctccggtcctatttataagaaaactttgactttttagattcattgagtaattaatgtatcttgtctagaatatagaccaagtacatca 2230405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 17265861 - 17265781
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatac 211  Q
    ||||| ||||| ||| ||||| ||||||||||||||| ||   |||||| |||||||||||||| ||||||||||||||||    
T  17265861 cggtcatatttataagaaaaatttgattttttaaattcatcgagtaattgatgtatcttgtctagaatatagactaaatac 17265781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 9077624 - 9077678
Alignment:
Q  161 ttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| |||| |||||    
T  9077624 ttaaatttattgtgtaattaatgtatcttgtctagaatatagaccaaatgcatca 9077678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 28630759 - 28630843
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||| ||| ||||| |||| |||||  ||| |||  |||||| |||||||||||||| ||||||||| ||||||||    
T  28630759 tccggtcctatttataagaaaaatttgactttttttattcattgagtaattgatgtatcttgtctataatatagaccaaatacat 28630843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 10283437 - 10283350
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||||||||| |||  ||||||| ||||||||||||||||  |||||| ||||||  |||||| |||||| |  ||||||||||    
T  10283437 ctccggtcctatttataagcaaaaattaattttttaaatttattgagtaattgatgtatactgtctaaaatatatatcaaatacatca 10283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 5483869 - 5483951
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||||  |||||| | |||| |||||||||||||||  ||||| |||||| ||||||| | | ||||||||||||||    
T  5483869 cggtcctatttacaataaatatttgactttttaaatttattaaataattgatgtattttgtctatattttagactaaatacat 5483951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 3064888 - 3064972
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaataca 212  Q
    ||||||| |||||| ||| ||||||||   |||||| ||| ||| | ||||||||||||||||| || ||||||||| |||||||    
T  3064888 ctccggttctatttataagaaaaaattatctttttagattcattgtataattaatgtatcttgtataaaatatagaccaaataca 3064972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 28863346 - 28863412
Alignment:
Q  149 aaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||||||||||||  || ||| | ||||| |||||||||||||| |||||| || ||||||||||    
T  28863346 aaaattgattttttagtttcattgtataatttatgtatcttgtctagaatataaaccaaatacatca 28863412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 38983137 - 38983055
Alignment:
Q  133 gtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||| ||| ||||| ||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||| ||||||||||    
T  38983137 gtcctatttataaaaaaaagttgattttttagattcattgtgtaattgatgtatcttgtctagaatatagacaaaatacatca 38983055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 30761382 - 30761468
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||| ||| ||| | |||| |||||| ||| |||  ||||||||| ||||||||||| ||||||||||||||||||    
T  30761382 cctccggtcctatttataagaaacatttgactttttacattcattgagtaattaatttatcttgtctagaatatagactaaatacat 30761468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 34447647 - 34447561
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||| |||||||||| ||| ||||| ||||||||||| ||| ||| |||||| ||||||||||||||| |||||| || ||||||||    
T  34447647 cctctggtcctatttataagaaaaagttgattttttagattcattgtgtaatcaatgtatcttgtctaaaatataaaccaaatacat 34447561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 32457346 - 32457269
Alignment:
Q  138 atttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||| ||| ||||| |||| |||||| ||| |||| |||||| |||||||||||||| ||||||||||||||||||||    
T  32457346 atttataagaaaaatttgactttttagattcattaagtaattgatgtatcttgtctagaatatagactaaatacatca 32457269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 29988906 - 29988984
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| ||| ||||||||||||||||| ||| ||| |||||||||| ||| ||||||| ||||||||  ||||||||||    
T  29988906 tatttataaaaaaaaattgattttttatattcattgtgtaattaatatattttgtctagaatatagatcaaatacatca 29988984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 7943584 - 7943495
Alignment:
Q  127 cctccggtcctatttttaataaaaaa-ttgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| |||||| |||| |||||| ||| |||   ||||| |||||||||||||||||||||||| ||||| ||||    
T  7943584 cctccggtcctatttataagaaaaaaattgactttttagattcattgaataattgatgtatcttgtctacaatatagaccaaatatatca 7943495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 20555263 - 20555348
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||||||| ||| |||||||| |||||||| ||  |||   ||||| |||||||||||||| ||||||||| ||||||||    
T  20555263 ctccggtcctatttataagaaaaaattaattttttagatacattgaataattgatgtatcttgtctagaatatagaccaaatacat 20555348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 12873727 - 12873815
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||||| |||| ||| ||| ||||| |||| |||||| ||| |||| ||||||||||||| | || || ||||||||||||||||||||    
T  12873727 cctccgatcctttttataagaaaaagttgactttttagattcattaagtaattaatgtatttggtatagaatatagactaaatacatca 12873815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 4410916 - 4410833
Alignment:
Q  133 gtcctatttttaataaaaaa-ttgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||| ||| |||||| |||| |||||| ||| ||| ||||||||||||||||||| || ||||||||  ||||||||||    
T  4410916 gtcctatttataagaaaaaagttgactttttagattcattgtgtaattaatgtatcttgtttaaaatatagatcaaatacatca 4410833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 28014294 - 28014365
Alignment:
Q  144 aataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||| |||||| ||| ||| | |||||| ||||||||||||| | ||||||| ||||||||||    
T  28014294 aataaaaaattgactttttagattcattgtataattattgtatcttgtctatagtatagaccaaatacatca 28014365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 28249082 - 28248991
Alignment:
Q  122 tatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||| || |||||| ||| ||||| |||| |||||| ||| ||||  |||||||||||| | || || ||||||||||||||||||    
T  28249082 tatttcctccagttctatttataagaaaaagttgactttttagattcattaaataattaatgtatttggtatagaatatagactaaatacat 28248991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 9152523 - 9152434
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatcaa 216  Q
    ||||||||| |||||  || ||| |||||| |||||| ||| |||  |||||| |||||||| ||||| ||||||||| |||||||||||    
T  9152523 cctccggtcttatttacaagaaacaattgactttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaa 9152434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 10204979 - 10205018
Alignment:
Q  176 aattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  10204979 aattgatgtatcttgtctaaaatatagactaaatacatca 10205018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 43714117 - 43714032
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||| ||| |||   |||| |||||| ||||| |  |||||| |||||||||||||| ||||||||| ||||||||    
T  43714117 cctccggtcctatttataagaaatttttgactttttagatttactgagtaattgatgtatcttgtcta-aatatagaccaaatacat 43714032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 5109368 - 5109453
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||||||| ||| ||||| || | |||||| ||| |||  ||||||||||||| | || || ||||||| ||||||||||    
T  5109368 ctccggtcctatttataagaaaaagttaactttttagattcattgagtaattaatgtatttggtatagaatataggctaaatacat 5109453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 38554601 - 38554516
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||||||||| ||| ||||| || | |||||||||| |||  ||||||||||||  | || || ||||||||| ||||||||    
T  38554601 ctccggtcctatttataagaaaaagttaactttttaaattcattgagtaattaatgtacttggtatagaatatagaccaaatacat 38554516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 920464 - 920504
Alignment:
Q  173 tgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  920464 tgtaattaacgtatcttgtttagaatatagactaaatacat 920504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 30758858 - 30758779
Alignment:
Q  132 ggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaataca 212  Q
    |||||||||| ||| ||||| |||| |||||| ||| |||  |||||| |||||||||||||| | ||||||| |||||||    
T  30758858 ggtcctatttataagaaaaatttgactttttagatt-attgagtaattgatgtatcttgtctaaagtatagaccaaataca 30758779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 71996 - 71907
Alignment:
Q  125 ttcctccggtcctattt-ttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    |||||||| |||||||| |||| ||||| ||||||| ||||||| ||| |||||||||||||| |||| || ||||||||||||||||||    
T  71996 ttcctccgatcctatttattaaaaaaaagttgatttattaaattcattgtgtaattaatgtattttgtataaaatatagactaaatacat 71907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 37178938 - 37179002
Alignment:
Q  151 aattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    |||| |||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||    
T  37178938 aattaatttattaaattcattgtgtaattaatgtatcttgtctaaaatatagactaaatacatca 37179002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 7375607 - 7375529
Alignment:
Q  133 gtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatac 211  Q
    ||||||||| ||| |||||||||| |||||| ||| ||| |||||||||||||||||||||| |||||| || ||||||    
T  7375607 gtcctatttataagaaaaaattgactttttagattcattgtgtaattaatgtatcttgtctagaatataaaccaaatac 7375529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 15342961 - 15343029
Alignment:
Q  147 aaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||| |||| |||||| ||| ||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  15342961 aaaaagttgaatttttagattcattgtgtaattaatgtatcttgtctagaatatagaccaaatacatca 15343029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 26760317 - 26760229
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||  || |||||||||  | || || ||||||||| ||||||||||    
T  26760317 cctccggtcctatttataagaaaaaattgattttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatca 26760229  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 47912957 - 47912892
Alignment:
Q  128 ctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtcta 194  Q
    |||||||||||||| ||| ||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  47912957 ctccggtcctatttataagaaaaa-ttgactttttaaatttattgtataattaatgtatcttgtcta 47912892  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 50155444 - 50155354
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||||| ||| ||||| |||| |||||| ||| |||  |||||| |||||| | ||||| ||||||||| ||||||||||    
T  50155444 ttcctccggtcctatttataagaaaaagttgactttttagattcattgagtaattgatgtatttggtctataatatagaccaaatacatca 50155354  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 38040422 - 38040344
Alignment:
Q  125 ttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatataga 203  Q
    ||||||||||||||||| ||| ||||| |||| |||||| ||| |||   ||||| |||||||||||||| ||||||||    
T  38040422 ttcctccggtcctatttataagaaaaatttgactttttagattcattgattaattgatgtatcttgtctagaatataga 38040344  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 49944839 - 49944925
Alignment:
Q  129 tccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||| ||| ||||| || | |||||| ||| |||   ||||| |||||||||||||| ||||||||| ||||||||||    
T  49944839 tccggtcctatttataagaaaaatttaactttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatca 49944925  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 640536 - 640611
Alignment:
Q  137 tatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||| ||| |||||||||| |||||| ||| || | |||||| ||||||||| |||| ||||||||||||||||||    
T  640536 tatttataagaaaaaattgactttttagattcatga-gtaattgatgtatcttatctaaaatatagactaaatacat 640611  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 23923562 - 23923642
Alignment:
Q  135 cctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||| ||| ||||| |||| |||||| ||| |||  ||||||||||||| ||||||| ||||||||| |||| |||||    
T  23923562 cctatttataagaaaaatttgaatttttagattcattgagtaattaatgtatattgtctagaatatagaccaaatgcatca 23923642  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 26924217 - 26924305
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| ||||| |||| |||||||||| |||  || |||||||||  | || || ||||||||| ||||||||||    
T  26924217 cctccggtcctatttataagaaaaagttgactttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatca 26924305  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 38738072 - 38737988
Alignment:
Q  130 ccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatc 214  Q
    |||||||||||| ||| ||||| || | |||||| ||| |||  |||||| |||||||||||||| |||||| || |||||||||    
T  38738072 ccggtcctatttataagaaaaatttaactttttagattcattgagtaattgatgtatcttgtctagaatataaaccaaatacatc 38737988  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 6661548 - 6661606
Alignment:
Q  157 ttttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||| ||| |||  |||||||||||||||||| || ||||||||| ||||||||||    
T  6661548 ttttttagattcatttagtaattaatgtatcttgtatagaatatagaccaaatacatca 6661606  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 37515230 - 37515148
Alignment:
Q  131 cggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||| ||| ||||| || | |||||| ||| |||| ||||||||||||| ||||||  ||||| || |||||||||    
T  37515230 cggtcctatttataagaaaaatttaactttttagattcattaagtaattaatgtatgttgtctggaatatggattaaatacat 37515148  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 44939188 - 44939122
Alignment:
Q  149 aaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||||| ||| |||  |||||| ||||||||  |||| ||||||||| ||||||||||    
T  44939188 aaaattgattttttagattcattgagtaattgatgtatctaatctagaatatagaccaaatacatca 44939122  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 24305804 - 24305735
Alignment:
Q  132 ggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatata 201  Q
    ||||||||||  || ||||| || ||||||||||||||||  |||||| ||||||||||| || ||||||    
T  24305804 ggtcctatttagaagaaaaatttaattttttaaatttattgagtaattgatgtatcttgtatagaatata 24305735  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 49184238 - 49184302
Alignment:
Q  122 tatttcctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtat 186  Q
    |||||||||| ||||||||| ||| ||| |||| |||||||||||| |||   ||||||||||||    
T  49184238 tatttcctccagtcctatttataaaaaataatttattttttaaattcatttaataattaatgtat 49184302  T

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Target: scaffold0123 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 28233 - 28145
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacatca 215  Q
    ||||||||||||| | ||| ||||| |||| |||| |||||||||   ||||| || ||||||||||| ||||||||  ||||||||||    
T  28233 cctccggtcctatatataagaaaaatttgacttttaaaatttattgaataattgatatatcttgtctaaaatatagatcaaatacatca 28145  T

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Target: scaffold0236 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 16792 - 16709
Alignment:
Q  127 cctccggtcctatttttaataaaaaattgattttttaaatttattatgtaattaatgtatcttgtctacaatatagactaaatacat 213  Q
    ||||||||||||||| ||| ||||| |||| |||  ||||| |||  |||||| |||||||||||||| ||||||||| ||||||||    
T  16792 cctccggtcctatttataagaaaaa-ttgacttt--aaattcattgagtaattgatgtatcttgtctagaatatagaccaaatacat 16709  T

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