View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_12 (Length: 439)
Name: NF19723_low_12
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 43054118 - 43053710
Alignment:
| Q |
16 |
caacaattgaaggaagatagtttgattaatggatccttccctctcctaatggaaaatggtaaaccaaaccaagaactaaaattaaggtttatattatggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43054118 |
caacaattgaaggaagatagtttgattaatggatccttccctctcctaatggaaaatggtaaaccaaatcaagaactaaaattaaggtttatattatggt |
43054019 |
T |
|
| Q |
116 |
tcaagccagcaaatttggaaccaagttggacaaagctactaagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43054018 |
tcaagccagcaaatttggaaccaagttggacaaagctactaagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtca |
43053919 |
T |
|
| Q |
216 |
tgttaagctctatcatgatgctcaccattcacctactttccaacctccttttgataattgtggagtccctagaaaactatgggaggatgtttataaagct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43053918 |
tgttaagctctatcatgatgctcaccattcacctacttttcaacctccttttgataattgtggagtccctagaaaactatgggaggatgtttataaagct |
43053819 |
T |
|
| Q |
316 |
attgagggtgcaaaatatttagtatatattgcaggctggtctttcaatcctaagatggttctggtacatatataatctcatttcatactctacattttat |
415 |
Q |
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| T |
43053818 |
attgagggtgcaaaatatttagtatatattgcaggctggtctttcaatcctaagatggttctggtacatatataatctcatttcatactctacattttat |
43053719 |
T |
|
| Q |
416 |
attgatata |
424 |
Q |
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||||||||| |
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| T |
43053718 |
attgatata |
43053710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 55 - 381
Target Start/End: Original strand, 5399501 - 5399827
Alignment:
| Q |
55 |
cctctcctaatggaaaatggtaaaccaaaccaagaactaaaattaaggtttatattatggttcaagccagcaaatttggaaccaagttggacaaagctac |
154 |
Q |
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|||||||| |||||||||| |||||||||| |||| ||||| | |||||||||||||| ||||| ||||| ||||||| ||||| | ||||| ||| |
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| T |
5399501 |
cctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggtttaagcctgcaaaattggaacaaagtttggcaaaggtac |
5399600 |
T |
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| Q |
155 |
taagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtcatgttaagctctatcatgatgctcaccattcacctacttt |
254 |
Q |
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|||| | | | || ||||||||| | | |||||| | |||||||| ||||||||||||||| || || || |||||||||||||| ||||| ||||| || |
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| T |
5399601 |
taagcaataatgaatttcaagggttaaaggatgcaaaatttccactaaggtctaattgtcaagtcaaactttatcatgatgctcatcattctcctacctt |
5399700 |
T |
|
| Q |
255 |
ccaacctccttttgataattgtggagtccctagaaaactatgggaggatgtttataaagctattgagggtgcaaaatatttagtatatattgcaggctgg |
354 |
Q |
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||||||||| |||||| ||||| || | ||| |||||||||||||||||||||| |||||||||||||| || |||| |||||||||| ||| |
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| T |
5399701 |
ccaacctccctttgatccatgtggtactccaaaaaatttatgggaggatgtttataaagccattgagggtgcaaagcatatagtttatattgcagcttgg |
5399800 |
T |
|
| Q |
355 |
tctttcaatcctaagatggttctggta |
381 |
Q |
| |
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|| | ||||| ||||||||| ||||| |
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| T |
5399801 |
tccctaaatcccaagatggttttggta |
5399827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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