View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_low_13 (Length: 436)

Name: NF19723_low_13
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19723_low_13
NF19723_low_13
[»] chr3 (9 HSPs)
chr3 (5-418)||(26411194-26411607)
chr3 (193-383)||(27699747-27699937)
chr3 (188-383)||(27710513-27710708)
chr3 (1-55)||(4844521-4844575)
chr3 (1-55)||(4870217-4870271)
chr3 (304-397)||(27726286-27726379)
chr3 (1-46)||(39976441-39976486)
chr3 (1-69)||(14339608-14339676)
chr3 (2-46)||(27769204-27769248)
[»] chr4 (3 HSPs)
chr4 (14-60)||(52254427-52254473)
chr4 (3-49)||(25869589-25869635)
chr4 (16-60)||(3350480-3350524)
[»] chr1 (4 HSPs)
chr1 (1-55)||(51814506-51814560)
chr1 (1-50)||(9964455-9964504)
chr1 (1-46)||(24573441-24573486)
chr1 (1-69)||(11438494-11438562)
[»] chr5 (2 HSPs)
chr5 (1-69)||(14495815-14495883)
chr5 (13-55)||(8642199-8642241)
[»] chr7 (2 HSPs)
chr7 (8-67)||(26526290-26526349)
chr7 (1-55)||(22760875-22760929)
[»] chr2 (2 HSPs)
chr2 (1-46)||(34041598-34041643)
chr2 (28-68)||(1695554-1695594)


Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 5 - 418
Target Start/End: Complemental strand, 26411607 - 26411194
Alignment:
Q  5 acattgagaaggagcacattctcagatcccaagtcaataccatcagaccaattcaaacgggttaacaaatgctttcatgttttcacttagttgaaaagtt 104  Q
    |||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26411607 acattgagaaggagcacactctcaggtcccaagtcaatatcaccagaccaattcaaacgggttaacaaatgctttcatattttcacttagttgaaaagtt 26411508  T
Q  105 atacaattctgttggtaatcttggttttgcaacaaccaccaatggctcagcaagaaacatatcatctctagacttttcaagactgatgcttgatgtagtg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26411507 atacaattctgttggtaatcttggttttgcaacaaccaccaatggctcagcaagaaacatatcatctttagacttttcaagactgatgcttgatgtagtg 26411408  T
Q  205 ggaggtatactccaagtgaagccatgtagtaacctagccaatagtaaaacagtcattgtggtgccaagcttgacaccaggacaactacgcattccagtgc 304  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411407 ggaggtatactccaagtgaagccatggagcaacctagccaatagtaaaacagtcattgtggtgccaagcttgacaccaggacaactacgcattccagtgc 26411308  T
Q  305 taaaggatatgaacttcaaacctggctctgtcaaaactatattggactcaccattcttgaaatggcgttctggtttgaacttatgtggttcatcccaaag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411307 taaaggatatgaacttcaaacctggctctgtcaaaactatattggactcaccattcttgaaatggcgttctggtttgaacttatgtggttcatcccaaag 26411208  T
Q  405 taatggatttctcc 418  Q
    ||||||||||||||    
T  26411207 taatggatttctcc 26411194  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 193 - 383
Target Start/End: Complemental strand, 27699937 - 27699747
Alignment:
Q  193 cttgatgtagtgggaggtatactccaagtgaagccatgtagtaacctagccaatagtaaaacagtcattgtggtgccaagcttgacaccaggacaactac 292  Q
    |||| |||| ||||||||| || ||||||||||||||| ||||||||||| ||||| |  | ||||||||||| ||||||| ||| |||||||||||  |    
T  27699937 cttgttgtattgggaggtaaacaccaagtgaagccatgaagtaacctagctaatagcattatagtcattgtggagccaagcatgataccaggacaacctc 27699838  T
Q  293 gcattccagtgctaaaggatatgaacttcaaacctggctctgtcaaaactatattggactcaccattcttgaaatggcgttctggtttgaa 383  Q
    || ||||  | ||||||| ||||||||||||  |||||||||||||| ||||||| ||| || ||||||| | ||| |||||||| |||||    
T  27699837 gccttcctatactaaaggttatgaacttcaattctggctctgtcaaagctatattagacccatcattcttaagatgacgttctggcttgaa 27699747  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 383
Target Start/End: Original strand, 27710513 - 27710708
Alignment:
Q  188 tgatgcttgatgtagtgggaggtatactccaagtgaagccatgtagtaacctagccaatagtaaaacagtcattgtggtgccaagcttgacaccaggaca 287  Q
    |||| |||||| || ||||| ||  |||||||||||||||||| ||||| || || ||||| |  |  ||||||||||  |||||| | ||| |||||||    
T  27710513 tgattcttgatatattgggatgtgcactccaagtgaagccatggagtaatcttgctaatagcattatggtcattgtggaaccaagcataacagcaggaca 27710612  T
Q  288 actacgcattccagtgctaaaggatatgaacttcaaacctggctctgtcaaaactatattggactcaccattcttgaaatggcgttctggtttgaa 383  Q
    || |||  |||| || ||||||||||| ||||||||  |||||||||||||  |||||   ||| || ||||||| | ||| ||||| ||||||||    
T  27710613 accacgtcttcctgtactaaaggatataaacttcaattctggctctgtcaacgctatagccgacccatcattcttaagatgacgttccggtttgaa 27710708  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4844521 - 4844575
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaa 55  Q
    |||||| | ||| ||||||||| || |||||||||||||||||||| ||||||||    
T  4844521 tgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaa 4844575  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4870217 - 4870271
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaa 55  Q
    |||||| | ||| ||||||||| || |||||||||||||||||||| ||||||||    
T  4870217 tgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaa 4870271  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 27726286 - 27726379
Alignment:
Q  304 ctaaaggatatgaacttcaaacctggctctgtcaaaactatattggactcaccattcttgaaatggcgttctggtttgaacttatgtggttcat 397  Q
    ||||| ||||||||||||||| |||| |||  ||||||||   | ||| || |||| || ||||||||||||||||| ||||| || |||||||    
T  27726286 ctaaatgatatgaacttcaaatctggttctaccaaaactaccatagacccatcattttttaaatggcgttctggtttaaacttgtgaggttcat 27726379  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39976441 - 39976486
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaatacca 46  Q
    |||||| ||||||||||||||| |||||  ||||||||||||||||    
T  39976441 tgagaccttgagaaggagcacactctcaagtcccaagtcaatacca 39976486  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14339676 - 14339608
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaattcaaacgggttaa 69  Q
    |||||||||||| ||||||||| || || |||||||| |||||||| ||| ||||| |||  |||||||    
T  14339676 tgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaactgggttaa 14339608  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 27769248 - 27769204
Alignment:
Q  2 gagacattgagaaggagcacattctcagatcccaagtcaatacca 46  Q
    ||||| ||||| | |||||||||||||||||| ||||||||||||    
T  27769248 gagacgttgaggaagagcacattctcagatcctaagtcaatacca 27769204  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 52254427 - 52254473
Alignment:
Q  14 aggagcacattctcagatcccaagtcaataccatcagaccaattcaa 60  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  52254427 aggagcacactctcatatcccaagtcaataccatcagaccaactcaa 52254473  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 25869589 - 25869635
Alignment:
Q  3 agacattgagaaggagcacattctcagatcccaagtcaataccatca 49  Q
    |||| ||||| ||||||||| ||||||||| ||||||||||||||||    
T  25869589 agactttgaggaggagcacactctcagatctcaagtcaataccatca 25869635  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 3350480 - 3350524
Alignment:
Q  16 gagcacattctcagatcccaagtcaataccatcagaccaattcaa 60  Q
    |||||||||| || ||| |||||||||||||||||||||| ||||    
T  3350480 gagcacattcccaaatctcaagtcaataccatcagaccaactcaa 3350524  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51814560 - 51814506
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaa 55  Q
    |||||| ||||| ||||||||| ||||||||| ||||||||||||||||| ||||    
T  51814560 tgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaa 51814506  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9964504 - 9964455
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcag 50  Q
    |||||||||||| | ||||||| || ||||||||||||||||| ||||||    
T  9964504 tgagacattgaggaagagcacactcccagatcccaagtcaataacatcag 9964455  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24573441 - 24573486
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaatacca 46  Q
    |||||| |||| |||||||||||||||||||| |||| ||||||||    
T  24573441 tgagaccttgaaaaggagcacattctcagatctcaagccaatacca 24573486  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11438494 - 11438562
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaattcaaacgggttaa 69  Q
    |||||| ||||| |||| |||| ||| | ||| |||||||||||||||||||||| ||||  |||||||    
T  11438494 tgagactttgaggaggatcacactcttaaatcgcaagtcaataccatcagaccaactcaagtgggttaa 11438562  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14495815 - 14495883
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaattcaaacgggttaa 69  Q
    |||||| | ||| ||||||||| || |||||||||||||||||||| ||||||||  |||| |||||||    
T  14495815 tgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggttaa 14495883  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 8642199 - 8642241
Alignment:
Q  13 aaggagcacattctcagatcccaagtcaataccatcagaccaa 55  Q
    ||||||||||||||||||||||||| ||||||||  |||||||    
T  8642199 aaggagcacattctcagatcccaagccaataccactagaccaa 8642241  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 26526349 - 26526290
Alignment:
Q  8 ttgagaaggagcacattctcagatcccaagtcaataccatcagaccaattcaaacgggtt 67  Q
    ||||| ||||||||| ||||| |||| |||||||||||| ||||||||| |||| |||||    
T  26526349 ttgaggaggagcacactctcaaatcctaagtcaataccaccagaccaatccaaatgggtt 26526290  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22760929 - 22760875
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaataccatcagaccaa 55  Q
    |||||| ||||| ||||||||| || ||| |||||||||||||||| ||||||||    
T  22760929 tgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaa 22760875  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34041598 - 34041643
Alignment:
Q  1 tgagacattgagaaggagcacattctcagatcccaagtcaatacca 46  Q
    |||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  34041598 tgagaccttgaggaggagcacactctcagatcctaagtcaatacca 34041643  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 1695594 - 1695554
Alignment:
Q  28 agatcccaagtcaataccatcagaccaattcaaacgggtta 68  Q
    |||||||||||||||| |||||||||||| |||| ||||||    
T  1695594 agatcccaagtcaatatcatcagaccaatccaaatgggtta 1695554  T

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