View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_low_15 (Length: 425)

Name: NF19723_low_15
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19723_low_15
NF19723_low_15
[»] chr7 (6 HSPs)
chr7 (15-300)||(514633-514924)
chr7 (195-285)||(529965-530055)
chr7 (340-409)||(515023-515093)
chr7 (340-399)||(530205-530264)
chr7 (154-194)||(30723069-30723109)
chr7 (154-194)||(44821959-44821999)
[»] chr8 (6 HSPs)
chr8 (153-184)||(6509343-6509374)
chr8 (155-194)||(25097387-25097426)
chr8 (142-184)||(8578561-8578603)
chr8 (153-194)||(27028830-27028871)
chr8 (154-194)||(1930035-1930075)
chr8 (147-179)||(39274529-39274561)
[»] chr3 (5 HSPs)
chr3 (153-199)||(46886717-46886763)
chr3 (153-198)||(18405857-18405902)
chr3 (155-184)||(24158543-24158572)
chr3 (154-194)||(1217830-1217870)
chr3 (156-184)||(41452525-41452553)
[»] chr5 (3 HSPs)
chr5 (154-195)||(18543225-18543266)
chr5 (153-194)||(32942617-32942658)
chr5 (154-194)||(41957481-41957521)
[»] chr2 (3 HSPs)
chr2 (153-194)||(10884551-10884592)
chr2 (154-194)||(3049974-3050014)
chr2 (153-201)||(13736316-13736364)
[»] chr1 (1 HSPs)
chr1 (153-194)||(7137028-7137069)
[»] chr6 (2 HSPs)
chr6 (153-185)||(4308563-4308595)
chr6 (156-184)||(31686403-31686431)
[»] chr4 (1 HSPs)
chr4 (154-186)||(36748276-36748308)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 514633 - 514924
Alignment:
Q  15 taggaattaatgctccaacatcacaatcatttctaaattatctatttttgatgattatctatggaactattctactctacagaaggaagcctctcaaggt 114  Q
    ||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  514633 taggaattaatgctccaacgtcacagtcgtttctaaattatgtatttttgatgattatctatggaactattctactctacagaaggaaacctctcaaggt 514732  T
Q  115 tatatctactctttgctaattcttatgttatgtacaacctataagctgttttcataagctatcctggagacctt-----------ctgaaattaacttcg 203  Q
    ||||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| |||           |||||| ||||||||    
T  514733 tatatttactctttgctaattc-----ttatgtacaacctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaaataacttcg 514827  T
Q  204 tattgcttctaatacaggcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagtaactatctttcatggt 300  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  514828 tattcgttctaatacaggcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagtaactatctttcatggt 514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 529965 - 530055
Alignment:
Q  195 ttaacttcgtattgcttctaatacaggcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagta 285  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  529965 ttaacttcatattggttctaatacatgcaaaatggtactattatatacttcttggattggttgatgtggaagcaaattttcttggtaagta 530055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 515023 - 515093
Alignment:
Q  340 atttatgaggacaaaaaacctaataagtttataggtgttt-tggaaaatttcaagtgcatgagttgttttc 409  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  515023 atttatgaggacaaaaaacctaataagtttataggtgtttatggaaaagttcaagtgcatgagttgttttc 515093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 530205 - 530264
Alignment:
Q  340 atttatgaggacaaaaaacctaataagtttataggtgttt-tggaaaatttcaagtgcatg 399  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||| || |||||||||    
T  530205 atttatgaggaccaaaaac-taataagtttataggtgtttatggaaaagttgaagtgcatg 530264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 30723109 - 30723069
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||| |||||||||||||||||||||| ||| |||||    
T  30723109 tataagctattttcataagctatcctggagagcttttgaaa 30723069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 44821959 - 44821999
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  44821959 tataagctgttttcataagctattctggagaacttatgaaa 44821999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 184
Target Start/End: Complemental strand, 6509374 - 6509343
Alignment:
Q  153 ctataagctgttttcataagctatcctggaga 184  Q
    ||||||||||||||||||||||||||||||||    
T  6509374 ctataagctgttttcataagctatcctggaga 6509343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 25097387 - 25097426
Alignment:
Q  155 ataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  25097387 ataagctgttttcataagctatcctggagagcttatgaaa 25097426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 8578561 - 8578603
Alignment:
Q  142 ttatgtacaacctataagctgttttcataagctatcctggaga 184  Q
    |||||||||  |||||||||||||||||||||||||| |||||    
T  8578561 ttatgtacagactataagctgttttcataagctatcccggaga 8578603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 27028830 - 27028871
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  27028830 ctataagctgttttcataagctatcttggagagcttatgaaa 27028871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 1930035 - 1930075
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||| ||| |||||| |||||    
T  1930035 tataagctgttttcataagctatcttggtgaccttgtgaaa 1930075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 39274529 - 39274561
Alignment:
Q  147 tacaacctataagctgttttcataagctatcct 179  Q
    ||||| |||||||||||||||||||||||||||    
T  39274529 tacaatctataagctgttttcataagctatcct 39274561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 46886763 - 46886717
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaattaac 199  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| ||||    
T  46886763 ctataagctgttttcataagctatcttggagaacttttgaaaataac 46886717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 18405902 - 18405857
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaattaa 198  Q
    ||||||| ||||||||||||||||| |||||| ||| |||||||||    
T  18405902 ctataagttgttttcataagctatcttggagaacttatgaaattaa 18405857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 24158572 - 24158543
Alignment:
Q  155 ataagctgttttcataagctatcctggaga 184  Q
    ||||||||||||||||||||||||||||||    
T  24158572 ataagctgttttcataagctatcctggaga 24158543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 1217870 - 1217830
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  1217870 tataagctgttttcataagctatccttgagaacttatgaaa 1217830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 41452525 - 41452553
Alignment:
Q  156 taagctgttttcataagctatcctggaga 184  Q
    |||||||||||||||||||||||||||||    
T  41452525 taagctgttttcataagctatcctggaga 41452553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 18543266 - 18543225
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaat 195  Q
    |||||| |||||||||||||||||||||||| ||| ||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatgaaat 18543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 32942617 - 32942658
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  32942617 ctataagctgttttcataagctatcttggagaacttatgaaa 32942658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 41957521 - 41957481
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  41957521 tataagctgttttcataagctatccttgagaacttatgaaa 41957481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 10884592 - 10884551
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||||| |||| ||| |||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatgaaa 10884551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 3049974 - 3050014
Alignment:
Q  154 tataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  3049974 tataagctgttttcataagctatcatggagagcttatgaaa 3050014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 13736364 - 13736316
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaattaactt 201  Q
    |||||||||||||||||||||||| || |||| ||| ||||| ||||||    
T  13736364 ctataagctgttttcataagctatactagagagcttatgaaaataactt 13736316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 7137069 - 7137028
Alignment:
Q  153 ctataagctgttttcataagctatcctggagaccttctgaaa 194  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  7137069 ctataagctgttttcataagctatcttggagaacttatgaaa 7137028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 4308563 - 4308595
Alignment:
Q  153 ctataagctgttttcataagctatcctggagac 185  Q
    ||||||| |||||||||||||||||||||||||    
T  4308563 ctataagttgttttcataagctatcctggagac 4308595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 31686431 - 31686403
Alignment:
Q  156 taagctgttttcataagctatcctggaga 184  Q
    |||||||||||||||||||||||||||||    
T  31686431 taagctgttttcataagctatcctggaga 31686403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 36748308 - 36748276
Alignment:
Q  154 tataagctgttttcataagctatcctggagacc 186  Q
    |||||||||||||||||||||||| ||||||||    
T  36748308 tataagctgttttcataagctatcttggagacc 36748276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University