View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_16 (Length: 416)
Name: NF19723_low_16
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 9123426 - 9123100
Alignment:
| Q |
12 |
agaacctgtgtggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacaga |
111 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
9123426 |
agaatctgtgcggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgatattatgggagttacaga |
9123327 |
T |
|
| Q |
112 |
tttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgatt |
211 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
9123326 |
tttgaatgaggagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgatt |
9123227 |
T |
|
| Q |
212 |
gtaatgcatgtattataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattactt |
311 |
Q |
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|||||| || ||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9123226 |
gtaatgtat-tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgctt |
9123129 |
T |
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| Q |
312 |
gtctggtttatttatcactgccaacgtct |
340 |
Q |
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||||||||| ||||| ||||||||||||| |
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| T |
9123128 |
gtctggtttctttattactgccaacgtct |
9123100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 9131533 - 9131207
Alignment:
| Q |
12 |
agaacctgtgtggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacaga |
111 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
9131533 |
agaatctgtgcggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgatattatgggagttacaga |
9131434 |
T |
|
| Q |
112 |
tttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgatt |
211 |
Q |
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| T |
9131433 |
tttgaatgaggagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgatt |
9131334 |
T |
|
| Q |
212 |
gtaatgcatgtattataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattactt |
311 |
Q |
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|||||| || ||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9131333 |
gtaatgtat-tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgctt |
9131236 |
T |
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| Q |
312 |
gtctggtttatttatcactgccaacgtct |
340 |
Q |
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| T |
9131235 |
gtctggtttctttattactgccaacgtct |
9131207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 24525294 - 24524997
Alignment:
| Q |
12 |
agaacctgtgtggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacaga |
111 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
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| T |
24525294 |
agaatctgtgcggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagattatgggagtgaatga |
24525195 |
T |
|
| Q |
112 |
tttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgatt |
211 |
Q |
| |
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|||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
24525194 |
tttgaatgaggagaagtttcttaacagagattgggaagatggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaatt |
24525095 |
T |
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| Q |
212 |
gtaatgcatgtatt---ataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt |
307 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525094 |
acaatgcatgtattatcataggaaggaact-tcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt |
24524997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 402
Target Start/End: Complemental strand, 24524967 - 24524921
Alignment:
| Q |
352 |
atatcaagtcactgcaactcatactatatagatggtcaattatcagttact |
402 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24524967 |
atatgaagtcactgcaactcata----atagatggtcaattatcagttact |
24524921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 9038960 - 9039096
Alignment:
| Q |
67 |
atttgtagggttggttctaaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcatt |
166 |
Q |
| |
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|||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
9038960 |
atttgtggggttggttttaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaacaga-attgggaagaaggagaaattatcatt |
9039058 |
T |
|
| Q |
167 |
ctcgattaattagctttttatcgataggaatgattgca |
204 |
Q |
| |
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||||||||||||| |||||||| ||||||||| |||| |
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| T |
9039059 |
ctcgattaattagttttttatctttaggaatgactgca |
9039096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
| Q |
146 |
gaagaaggagaaattatcattctcgattaattagctttttat |
187 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39815109 |
gaagaaggagaagttatcattctcgattaattagctttttat |
39815150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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