View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_17 (Length: 411)
Name: NF19723_low_17
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 17137359 - 17136986
Alignment:
| Q |
18 |
ggtttcacaatcgctactcgctccgtgattcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcaca |
117 |
Q |
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| T |
17137359 |
ggtttcacaatcgctactcgctccgtgattcctgtaccttttgatcctccatccggagatttcaccatactggcaggagattggtacaaaagaaatcaca |
17137260 |
T |
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| Q |
118 |
gagttaagttttaactaagacacagccttcactgtttaagaaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattt |
217 |
Q |
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| T |
17137259 |
cagttaagttttaactaagaaacagccttcactgtttaagaaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattt |
17137160 |
T |
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| Q |
218 |
tagatagcagaaaaaatcttcctttccctgatggacttgtcatcaatggtcgcggttctaatgcttacacattcacggttgatcaaggtatacatgaatt |
317 |
Q |
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| T |
17137159 |
tagatagcggaaaaaatcttcctttccctgatggacttgtcatcaatggtcgcggttctaatgcttacacattcacggttgatcaaggtatacatgaatt |
17137060 |
T |
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| Q |
318 |
tcaacccatttgtttacttgaaattttttaccatagcagatgtagtcgatttgtttttgtatgactactgatcg |
391 |
Q |
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| T |
17137059 |
tcaacccatttgtttacttgaaattttttaccatagcagatgtagtcgattagtttttgtatgactactgatcg |
17136986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 17346435 - 17346783
Alignment:
| Q |
18 |
ggtttcacaatcgctactcgctccgtgattcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcaca |
117 |
Q |
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| T |
17346435 |
ggtttcacaatcgctagtcgctccgtgattcccgtacctttcgatcctccatccggagattacaccatattggcaggagattggtacaaaagaaatcaca |
17346534 |
T |
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| Q |
118 |
gagttaagttttaactaagacacagccttcactgtttaagaaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattt |
217 |
Q |
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||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||| ||||||| |
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| T |
17346535 |
cagttaagttttaactaagaaatagccttcacggtttaagaaatcttgaataggtcatgacttcatctgtgttt-tttttgcaggatttgagagccattt |
17346633 |
T |
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| Q |
218 |
tagatagcagaaaaaatcttcctttccctgatggacttgtcatcaatggtcgcggttctaatgcttacacattcacggttgatcaaggtatacatgaatt |
317 |
Q |
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| T |
17346634 |
tagatagcggaagtgatcttcctttcccggatggacttgtcatcaatggtcgcggttccaatgcttacacattcgcggttgatcaaggtatacatgaatt |
17346733 |
T |
|
| Q |
318 |
tcaacccatttgtttacttgaaattttttaccatagcagatgtagtcgat |
367 |
Q |
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| | | ||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
17346734 |
tagatcaatttgtttacttgaaatttgataccatagcagacgtagccgat |
17346783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 37091568 - 37091496
Alignment:
| Q |
235 |
cttcctttccctgatggacttgtcatcaatggtcgcggttctaatgcttacacattcacggttgatcaaggta |
307 |
Q |
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|||||||| || || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37091568 |
cttcctttaccagacgggcttatcatcaatggtcgcggttctaatgcttacacattcacggttgatcaaggta |
37091496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 37091936 - 37091862
Alignment:
| Q |
43 |
tgattcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcaca |
117 |
Q |
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| T |
37091936 |
tgattcctgtaccgtttcctcctccatcgaatgatttcaccatattggcaggagattggtacaacagaaatcaca |
37091862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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