View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_20 (Length: 387)
Name: NF19723_low_20
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 29943492 - 29943644
Alignment:
| Q |
8 |
tcgaagaatatcaacaattttttatctcttatttttctgaaaggctggttttttattgcatctacagtatgacacaagagcctaatttagaggaatggac |
107 |
Q |
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| T |
29943492 |
tcgatgaatatcaacaattttttatctcttatttttctgaaaggctggttttttattgtatctacagtatgacacaagagcctaatttagaggaatggac |
29943591 |
T |
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| Q |
108 |
ttgtagagctgaatcttgtgatttgcttcatgaaccagtgagtgatcaaaatc |
160 |
Q |
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| T |
29943592 |
ttgtagagctgaatcttgtgatttgcttcatgaaccagtgagtgatcaaaatc |
29943644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 214 - 368
Target Start/End: Original strand, 29943698 - 29943852
Alignment:
| Q |
214 |
ccttgaaaatggcaggttcgtatagcgttagtcgggaaatatacatgtctttctgattcctacctctcagttacaaaggtgacgttagcttaaactttat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29943698 |
ccttgaaaatggcaggttcgtatagcgttagtcgggaaatatacatgtctttctgattcctacctctcagttacaaaggtgacgttagcttaaactttat |
29943797 |
T |
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| Q |
314 |
ggctgcattaatcttatagcttcctgagnnnnnnnnaaagagtgaaatatatatt |
368 |
Q |
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| T |
29943798 |
ggctgcattaatcttatagcttcctgagttttttttaaagagtgaaatatatatt |
29943852 |
T |
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