View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_21 (Length: 381)
Name: NF19723_low_21
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 87 - 366
Target Start/End: Original strand, 38367693 - 38367981
Alignment:
| Q |
87 |
gttggatttggaattgagtattaatcatgtttaataatttcaaattctgcaatat-----------aaataaaacaaaggaaaacagtgaggaatcaaat |
175 |
Q |
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| T |
38367693 |
gttggatttggaattgagtattaatcatgtttaataatttaaaattctgcaatataaattatatataaataaaacaaagaaaaacagcgaggaatcaaat |
38367792 |
T |
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| Q |
176 |
ttaaatgcaaattggagaatattgatcatgaaggcatagcagc-ttgacaaacactgtatttgatatcaaaatttagaagtcgaaatgtcatttctctta |
274 |
Q |
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| T |
38367793 |
ttaaatgcaaattggagaatattgatcatgaaggcatagcagctttgacaaacactgtatttgatatc-aaatttagaagtcgaaatgtcatttctctta |
38367891 |
T |
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| Q |
275 |
ttataataaatgagcttcgttttaccacaattcttaaaataatagcatatgaatgcatgtcccttaaaataaatattgattgagtggtaatt |
366 |
Q |
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| T |
38367892 |
ttataataagtgagcttcgttttaccacaattcttaaaataatagc--atgaatgcatgtcccttaaaataaatattgattgagtggtaatt |
38367981 |
T |
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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 5750678 - 5750764
Alignment:
| Q |
142 |
aaataaaacaaaggaaaacagtgaggaatcaaatttaaatgcaaattggagaatattgatcatgaaggcatagcagcttgacaaaca |
228 |
Q |
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| T |
5750678 |
aaataaaacaaagaaaaatagtgaggaatcaaagttaaccgcaatttggagaatattgatcatgaaggcacaacagattgacaaaca |
5750764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 228
Target Start/End: Complemental strand, 44523903 - 44523753
Alignment:
| Q |
87 |
gttggatttggaattgagtattaatcatgtttaataatttcaaattctgcaatat-----------aaataaaacaaaggaaaacagtgaggaatcaaat |
175 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
44523903 |
gttggatttggaattgagta---atcatgtttaataatttaaaattctgcaatataaattatatgaaaataaaacaaagaaaaatagtgaggaatcaaag |
44523807 |
T |
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| Q |
176 |
ttaaatgcaaattggagaata-ttgatcatgaaggcatagcagcttgacaaaca |
228 |
Q |
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|||| ||||| |||||||||| ||||||||||| || | ||| |||||||||| |
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| T |
44523806 |
ttaactgcaatttggagaatatttgatcatgaattcacaacagattgacaaaca |
44523753 |
T |
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