View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_22 (Length: 375)
Name: NF19723_low_22
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 182 - 359
Target Start/End: Original strand, 21703573 - 21703750
Alignment:
| Q |
182 |
aaaaccatcttaaccgttacacctttaagatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagccacacatccatcatttctac |
281 |
Q |
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| T |
21703573 |
aaaaccatcttaaccattacacctttaagatagtcccaatccattctatcatatactttgttgatatctaacttcaaagccacacatccatcatttctac |
21703672 |
T |
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| Q |
282 |
tctttttatttttcatatagtgtataacctggaatgcaaccgttgcgttatcaagaattgtccgtaatgggacaaaag |
359 |
Q |
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| T |
21703673 |
tctttctagttttcatacagtgtataacctggattgcaaccgttgcgttatcaagaattgtccgacatgggacaaaag |
21703750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 21701328 - 21701512
Alignment:
| Q |
2 |
gcatctcgaagaatatctgatagaccttctgcaccaataataaacaggtgagggggtagaggatcaccttgacaaggccccctatctgggataatcggac |
101 |
Q |
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| T |
21701328 |
gcatctcgaataagaggtgatagaccttctgcaccaataataaacaggtaaggggatagaggatcaccttgacaaggccccttgtctgggataaccagac |
21701427 |
T |
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| Q |
102 |
cacccatctcattattaaccaagatagagtaatcgacggattctatgcataaagacatccattctatccatttctcagagaaaac |
186 |
Q |
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| T |
21701428 |
catccttctcattattaaccaagatagagtaatcaatggattctatgcataaagacatccattgtatccatttctcagagaaaac |
21701512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 19823572 - 19823627
Alignment:
| Q |
206 |
ttaagatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagc |
261 |
Q |
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| T |
19823572 |
ttaagatagtcccaatccattctatcataagctttgctgatgtcaagcttcaaagc |
19823627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 36303780 - 36303724
Alignment:
| Q |
209 |
agatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagccaca |
265 |
Q |
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| T |
36303780 |
agataatcccaatcgattctatcataagccttgttgatgtctaatttcaaagccaca |
36303724 |
T |
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