View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_26 (Length: 336)
Name: NF19723_low_26
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 10213007 - 10212698
Alignment:
| Q |
13 |
attcttagatatgtttatactaatataatatttttgagaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcatttttaaatga |
112 |
Q |
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| T |
10213007 |
attcttagatatgtttatactaatataatatttttgagaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcatttttaaacga |
10212908 |
T |
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| Q |
113 |
atgttgcaggtgactgagttgcgtaaaggtgttagatcaacttatgatccatcctttgtaattccatcaacacaatctttgtttaaaggagtaactagga |
212 |
Q |
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| T |
10212907 |
atgttgcaggtgactgagttgcgtaaaggtgttagatcagcttatgatccatcctttgtaattccatcaacacaatctttgtttaaaggagtaactagga |
10212808 |
T |
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| Q |
213 |
gttttgtagttattaatacagtaagtattttatcatagggatcaaattctctcactcttacctctcaacttttttatcacctgcattgtcaaccaccaag |
312 |
Q |
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| T |
10212807 |
gttttgtagttattaatacagtaagtattttatgatagggatcaaattttctcactcttacctctcaacttttttatcacctgcattgtcaaccaccaag |
10212708 |
T |
|
| Q |
313 |
gagagaaaga |
322 |
Q |
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|||||||||| |
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| T |
10212707 |
gagagaaaga |
10212698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 10105268 - 10105579
Alignment:
| Q |
13 |
attcttagatatgtttatactaatataatatttttgagaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcatttttaaatga |
112 |
Q |
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| T |
10105268 |
attcttacatatgtttagactaatataatatttttgagaagagatgaggttgaatatcccgcaagtgcaaagcaatttcatctttgtcatttttaaatga |
10105367 |
T |
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| Q |
113 |
atgttgcaggtgactgagttgcgtaaaggtgttagatcaacttat---gatccatcctttgtaattccatcaacacaatctttgtttaaaggagtaacta |
209 |
Q |
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| T |
10105368 |
atgttgcaggtgactgagttgtgtacaggtgtcagatcagcttatctggatccttccttcgtaataccatcaacacaatctttgtctgaaggagtaacca |
10105467 |
T |
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| Q |
210 |
ggagttttgtagttattaatacagtaagtattttatcatagggatcaaattctctcactcttacctctcaacttttttatcacctgcattgtcaaccacc |
309 |
Q |
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| T |
10105468 |
ggagttttgtagttattaatatagtaagtattttatcatagggatcaaattctccaactcttatctctcaatttttttatcatctgtgtt-ccaaccacc |
10105566 |
T |
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| Q |
310 |
aaggagagaaaga |
322 |
Q |
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||| ||||||||| |
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| T |
10105567 |
aagaagagaaaga |
10105579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 9683380 - 9683269
Alignment:
| Q |
38 |
taatatttttgagaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcattttta-aatgaatgttgcaggtgactgagttgcgt |
136 |
Q |
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|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||||||| |||| || | | |
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| T |
9683380 |
taatatttttgataagagacgaggttgaatatcccc-aagtgcaaagcaatttcatctttgttgtttttataacaaatgttgcaggttactgggtcgtat |
9683282 |
T |
|
| Q |
137 |
aaaggtgttagat |
149 |
Q |
| |
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| T |
9683281 |
aagggtgttagat |
9683269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 9675486 - 9675419
Alignment:
| Q |
35 |
atataatatttttgagaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcat |
102 |
Q |
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||||| || ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
9675486 |
atatattaattttgagaagagacgaggttgaatatccccgaagtgcaaagcaatttcttctttgtcat |
9675419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 9675399 - 9675302
Alignment:
| Q |
93 |
tctttgtcatttttaaatgaatgttgcaggtgactgagttgcgtaaaggtgttagatcaacttat----gatccatcctttgtaattccatcaacaca |
186 |
Q |
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||||||||||||||||| ||||| |||| | ||||||| | | |||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
9675399 |
tctttgtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacaca |
9675302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 10210183 - 10210107
Alignment:
| Q |
247 |
atagggatcaaattctctcactcttacctctcaactttttt-atcacctgcattgtcaaccaccaaggagagaaaga |
322 |
Q |
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||||||||||||| || |||||| | |||||||||||||| |||||||||||| | ||||||||||| |||||||| |
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| T |
10210183 |
atagggatcaaatgatcccactctaatctctcaactttttttatcacctgcattcttaaccaccaaggggagaaaga |
10210107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 10108938 - 10108984
Alignment:
| Q |
247 |
atagggatcaaattctctcactcttacctctcaacttttttatcacctg |
295 |
Q |
| |
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|||||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
10108938 |
atagggataaaattctcccactctta--tctcaacttttttatcacctg |
10108984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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