View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_27 (Length: 335)
Name: NF19723_low_27
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 48923098 - 48923396
Alignment:
| Q |
1 |
tcaccaaaaaacaaacaaaatccatatcagtaaattaaagttactcctgatgtcagtaaataaaagggaatatatcatactaatgtagagggaggcttcg |
100 |
Q |
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| T |
48923098 |
tcaccaaaaaacaaacaaaatccatatcagtaaattaaagttactcctgatgtcagtaaataaaggggaatatatcatactaatgtagagggaggcttcg |
48923197 |
T |
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| Q |
101 |
ttctgcaaacatgagaaggaagaacaattttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaaacttctg-----------ca |
189 |
Q |
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| T |
48923198 |
ttctgcaaacatgagaaggaagaacaattttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaagcttctgctaggtagaaaca |
48923297 |
T |
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| Q |
190 |
tacatgtttgtgcttgctttgagatatataagctataagctacaatgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatgagtgtga |
288 |
Q |
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| T |
48923298 |
tacatgtttgtgcttgctttgagatatataagctataagctacaatgatttgaaacgtatgaaagtggaaggaaatattaagcatttcaatgagtgtga |
48923396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 48878268 - 48878206
Alignment:
| Q |
69 |
aatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
131 |
Q |
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| T |
48878268 |
aatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaatttt |
48878206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 48875688 - 48875605
Alignment:
| Q |
233 |
aatgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatgagtgtgagtggatcagggaagattgtgagataggc |
316 |
Q |
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| T |
48875688 |
aatgtttcgaagcatatgaaagtggaagaagataccaagcatttcaacgagtgtgcgtggatcagggtgcattgtgaaataggc |
48875605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 48923001 - 48923034
Alignment:
| Q |
1 |
tcaccaaaaaacaaacaaaatccatatcagtaaa |
34 |
Q |
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| T |
48923001 |
tcaccaaaaaacaaacaaaatccatgtcagtaaa |
48923034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 48873188 - 48873144
Alignment:
| Q |
87 |
agagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
131 |
Q |
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| T |
48873188 |
agagggaggctttgttatgcaaacatgagaaagaagaagaatttt |
48873144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 9573919 - 9573867
Alignment:
| Q |
247 |
tatgaaagtggaaggaaatattaagcatttcaatgagtgtgagtggatcaggga |
300 |
Q |
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| T |
9573919 |
tatgaaagtggaagaaaatattcagcatttcaatg-gggtgagtggatcaggga |
9573867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 9583006 - 9582959
Alignment:
| Q |
235 |
tgattcgaaacgtatgaaagtggaaggaaatattaagcatttcaatga |
282 |
Q |
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| T |
9583006 |
tgattcgaagcttatgaaagtggaagaaaatattcagcatttcaatga |
9582959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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