View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_30 (Length: 326)
Name: NF19723_low_30
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 43398920 - 43398628
Alignment:
| Q |
18 |
cctgtaaccacaaaatatgcaatttacacaattgcaaaaaatgtaataaggaggaggttgatgttggtttctattctatttaaactttagttttaatttt |
117 |
Q |
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| T |
43398920 |
cctgtaaccacaaaatatgcaatgtacacaattgcaaaaaatgtaataaggaggaggttgatgttggtttctattctatttaaattttagtattaatttt |
43398821 |
T |
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| Q |
118 |
acatggtttacaagaaagaccttgcaatattatatatgtgcgatttaaaaatgccttaagtttttaataataaattattcactatatactttcatcttat |
217 |
Q |
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| T |
43398820 |
acatggtttacaagaaagaccttgcaatattatatatgtgtgatttaaaaatgccttaagtttttaataataaattattcactatatactttcatcttat |
43398721 |
T |
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| Q |
218 |
cgaatttcctgcttttccattttgtaaagaaataataaaatatcccttttaattatttatctctcttacctatttgtgcagcaacaatgtgtt |
310 |
Q |
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| T |
43398720 |
cgaatttcctgcttttccattttgtaaagaaataataaaatatcccttttaattatttatctctcttacctatttgtgcagcaacaatgtgtt |
43398628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 43414220 - 43414140
Alignment:
| Q |
180 |
tttaataataaattattcactatatactttcatcttatcgaatttcctgcttttccattttgtaaa---gaaataataaaat |
258 |
Q |
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| T |
43414220 |
tttaataataaattat-cactatatactttcatcttattgagtttactgcttttccattttgtaaagtcgaaataataaaat |
43414140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 43414315 - 43414227
Alignment:
| Q |
53 |
aaaaaatgtaataaggaggaggttgatgttggtttctattctatttaaactttagttttaattttacatggtttacaagaaagaccttgcaatat |
147 |
Q |
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| T |
43414315 |
aaaaaaggtaaaaaggaggaggttgatgtgggtttctattctat------tttaattttaattttacatgctttagaagaaacaccttgcaatat |
43414227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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