View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_low_31 (Length: 323)

Name: NF19723_low_31
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19723_low_31
NF19723_low_31
[»] chr6 (15 HSPs)
chr6 (1-311)||(1831952-1832262)
chr6 (7-266)||(1827215-1827460)
chr6 (7-277)||(6465044-6465314)
chr6 (7-310)||(6473207-6473510)
chr6 (7-311)||(1839049-1839355)
chr6 (36-310)||(6526109-6526386)
chr6 (7-277)||(6457084-6457354)
chr6 (133-270)||(1845847-1845983)
chr6 (70-276)||(1841986-1842192)
chr6 (7-165)||(1828190-1828348)
chr6 (250-310)||(13035906-13035966)
chr6 (261-311)||(1827156-1827206)
chr6 (250-311)||(1822309-1822370)
chr6 (135-311)||(6505319-6505495)
chr6 (135-277)||(6516304-6516446)
[»] chr7 (4 HSPs)
chr7 (156-277)||(46383276-46383398)
chr7 (180-308)||(3753994-3754122)
chr7 (7-77)||(46383132-46383202)
chr7 (180-215)||(9665567-9665602)
[»] chr1 (1 HSPs)
chr1 (154-229)||(35244270-35244345)
[»] chr4 (1 HSPs)
chr4 (180-215)||(13536591-13536626)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 1832262 - 1831952
Alignment:
Q  1 tacctgtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832262 taccagtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcg 1832163  T
Q  101 tagtttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggctta 200  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832162 tagtttacaaagctcaaaacatcattgacgtgcgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggctta 1832063  T
Q  201 tgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccga 300  Q
    | || |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1832062 tactctctaccccaaattggatcaatctttgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatggtcgttattaattccaaacccga 1831963  T
Q  301 aatcaacacca 311  Q
    |||||||||||    
T  1831962 aatcaacacca 1831952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 1827460 - 1827215
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||| |||| ||||| ||||| |||||||    
T  1827460 tcaaggctgcagaataatatgcattcattgcttcactagcgctctcttgatttcttccatcagtgaattcagttagccctccagcccaagagtgtagttt 1827361  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
    ||||||| ||||| | ||| ||              ||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||||  |||    
T  1827360 acaaagcacaaaataccttaga--------------gttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttatatttt 1827275  T
Q  207 ctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaa 266  Q
    ||||||||||||| ||||||||||| |||||||||||||||  |||||||||||||||||    
T  1827274 ctaccccaaattgaatcaatctttgcaagcactgcaattcgatagagaaagtatcctaaa 1827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 6465044 - 6465314
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| ||||| ||||| ||||||||||  |||||||||||  ||||||| |||||||||||   ||| ||| ||| |||| | ||| | ||  | | |||    
T  6465044 tcaaagctgctgaatagtatgcattcacagcttcactagtactctcttgatttcttccatctccgaactcagttaaccctccggcccacgaatgcaattt 6465143  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
    | |||| || ||||| ||| |||| |||||||| ||||| | |||||| |||||| ||||||||||  | ||||||||||| ||||||||||||| |||     
T  6465144 aaaaagatcgaaacaccttagacgggtgtaattcgagttcggatttctgctcaagttcataaaatcagccatgagtgaataagcttgaggcttatacttc 6465243  T
Q  207 ctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatg 277  Q
    ||||||||||||||||||||||||| |||||| |||||||   ||||||||||||||||||||||||||||    
T  6465244 ctaccccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatg 6465314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 6473510 - 6473207
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| ||||||||||| ||||||||||  |||||||||||  ||||||||||||||||||| |  || ||  ||| |||| | ||| ||||  | |||||    
T  6473510 tcaacgctgcagaatagtatgcattcacggcttcactagtactctcttggtttcttccatccgcaaactcggttaaccctccggcccaagaatgcagttt 6473411  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
      |||| |||||||| |||  | | || |||||||| || || ||| | ||||||||||||||||| || ||||||| |||||||||||||||||  ||     
T  6473410 gtaaagatcaaaacaccttaaaggagtataatttgaattcgagtttttgctcaaggtcataaaatcttccatgagtgcataggcttgaggcttatatttc 6473311  T
Q  207 ctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaa 306  Q
     ||||||||| |||||||||||| | ||||||||||||||   |||||||||| ||||||||||||||||| || || | |||||| ||||||||||||     
T  6473310 ttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcag 6473211  T
Q  307 cacc 310  Q
    ||||    
T  6473210 cacc 6473207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 1839355 - 1839049
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| |||| |||||| |||||||||| || |||||||||| | ||||| ||||| ||||||| ||| ||  ||| |||| | ||| ||||| ||| |||    
T  1839355 tcaaagctgaagaatagtatgcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcccaagagtgtaattt 1839256  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggc----ttatg 202  Q
    | |||| || ||||| ||| |||   ||||||| ||||| |||||||||||  ||||||||||||   ||||||||||||||| |||||||    |||      
T  1839255 ataaagatctaaacaccttagacacatgtaattagagttcgaatttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaa 1839156  T
Q  203 ctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaa 302  Q
     ||| ||||||||||||||||||||||||   |||||||||||| | ||||||| |||||||||||||||||||| || |  | ||||||||||||||||    
T  1839155 ttttataccccaaattggatcaatctttg--tgcactgcaattcattagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaa 1839058  T
Q  303 tcaacacca 311  Q
    ||| |||||    
T  1839057 tcagcacca 1839049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 6526109 - 6526386
Alignment:
Q  36 gcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagtttacaaagctcaaaacatctttgacgtgtgt 135  Q
    |||||||| ||  ||||||| ||||||||||||||||||||  ||| |||| ||||| ||||| ||| |||| | || || ||||| ||| || | ||||    
T  6526109 gcttcactggtactctcttgatttcttccatcagtgaattctgttagccctccagcccaagagtgtaatttatacagatcgaaacaccttagatgcgtgt 6526208  T
Q  136 aat---ttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttgg 232  Q
    |||   | | |||||||||||| ||||   ||||||||||  | ||||  ||||||||||||| ||||| ||||||||||||||| ||||||||||| |     
T  6526209 aataactagggtttgaatttctgctcagattcataaaatcagccatgacagaataggcttgagacttatactttctaccccaaataggatcaatcttagc 6526308  T
Q  233 aagcactgcaattcgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacc 310  Q
    ||||||||||||||   |||||||||||||||||||||||||||| || || | || ||| ||||| |||||| ||||    
T  6526309 aagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcacc 6526386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 6457084 - 6457354
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||| ||||||| ||| ||||||||||  |||||||||||  ||||||| ||||||||||| |  |||||  |||  ||| ||||| ||||  | | |||    
T  6457084 tcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaagaatgaaattt 6457183  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgcttt 206  Q
    | |||| || ||||| |||  |||||| |||||||||||||| ||||| |  ||| |||  |||||  | ||||||||||| |||||||| |||| ||||    
T  6457184 ataaagatcgaaacaccttaaacgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccatgagtgaataagcttgaggtttatacttt 6457283  T
Q  207 ctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatg 277  Q
    || ||||||  |||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  6457284 cttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatg 6457354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 1845983 - 1845847
Alignment:
Q  133 tgtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttgg 232  Q
    ||||||| ||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||   |||| |||||||||||||||||||||||     
T  1845983 tgtaattagagtttgaatttctactca-ggtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgc 1845885  T
Q  233 aagcactgcaa-ttcgtaagagaaagtatcctaaatgat 270  Q
    |||||||| || ||||| |||||||||||| ||||||||    
T  1845884 aagcactgaaatttcgt-agagaaagtatcgtaaatgat 1845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 1842192 - 1841986
Alignment:
Q  70 tgaattcacttacccctacagcctaagagcgtagtttacaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtcataaa 169  Q
    |||||||| ||| |||| ||||  ||||| ||| ||||||||| || ||||| ||| |||  |||| ||| |||||||||||||||||||||||||||||    
T  1842192 tgaattcagttagccctccagctcaagagtgtaatttacaaagatcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaa 1842093  T
Q  170 atcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatga 269  Q
    |||||  ||||||||||   |||||| || || |||| || ||||||||||||||||||| | | ||| ||||||||   |||||||||| | |||||||    
T  1842092 atccttcatgagtgaatccacttgagtctcatactttgtatcccaaattggatcaatcttagcatgcaatgcaattccatagagaaagtaacttaaatga 1841993  T
Q  270 taatgat 276  Q
    || ||||    
T  1841992 tattgat 1841986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 1828348 - 1828190
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccctacagcctaagagcgtagttt 106  Q
    |||||||||| ||||| |||||||||| ||| ||||||||| ||||||| ||||| ||||||| ||||||  ||| |||| | ||| ||||| ||| |||    
T  1828348 tcaaggctgcggaatagtatgcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccctccggcccaagagtgtaattt 1828249  T
Q  107 acaaagctcaaaacatctttgacgtgtgtaatttgagtttgaatttctactcaaggtca 165  Q
    | |||| || ||||| ||  |||  ||||||||   ||| || ||||||||||||||||    
T  1828248 ataaagatcgaaacacctcagacacgtgtaattattgttagagtttctactcaaggtca 1828190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 13035966 - 13035906
Alignment:
Q  250 agagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacc 310  Q
    |||||||||| |||||||||||||||||||| || | ||||||||||||||||||| ||||    
T  13035966 agagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcacc 13035906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 1827206 - 1827156
Alignment:
Q  261 cctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 311  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  1827206 cctaaatgataatgatggtcgttataaattccaaacccgaaatcagcacca 1827156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 1822370 - 1822309
Alignment:
Q  250 agagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 311  Q
    ||||||||||| ||||||||||||||||||| || | ||||| |||||| |||||| |||||    
T  1822370 agagaaagtattctaaatgataatgatggtcattataaattcaaaacccaaaatcagcacca 1822309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 311
Target Start/End: Original strand, 6505319 - 6505495
Alignment:
Q  135 taatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaa 234  Q
    ||||||||||| || | | | || ||| |||||||||| || |  |||||||||||||||| |||||  || ||||||||  ||||||| ||||||  ||    
T  6505319 taatttgagttcgattctatgcttaagttcataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaa 6505418  T
Q  235 gcactgcaatt-cgtaagagaaagtatcctaaatgataatgatggtcgttcttaattccaaacccgaaatcaacacca 311  Q
    ||||||| ||| ||||| ||||| |||||||| ||| | ||||| || || | |||||| || ||||||||| |||||    
T  6505419 gcactgctattgcgtaa-agaaaatatcctaagtgaaagtgatgatcattgtaaattccgaaaccgaaatcaccacca 6505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 277
Target Start/End: Complemental strand, 6516446 - 6516304
Alignment:
Q  135 taatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaa 234  Q
    ||||||||||| || |||  ||| ||| ||||||| || || || |||||||||| |||   ||||| ||| ||||||||   ||||||||||||   ||    
T  6516446 taatttgagttcgattttaaacttaagttcataaagtcttccataagtgaataggattgtttcttatacttcctaccccatgctggatcaatcttaacaa 6516347  T
Q  235 gcactgcaattcgtaagagaaagtatcctaaatgataatgatg 277  Q
    ||||||||||||   | ||||| |||||||| |||||||||||    
T  6516346 gcactgcaattccataaagaaaatatcctaattgataatgatg 6516304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 46383276 - 46383398
Alignment:
Q  156 ctcaaggtcataaaatcctcaatgagtgaataggctt-gaggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagaga 254  Q
    |||||| |||||| ||| || ||||||||||| |||| ||| ||||| ||| ||||||||||| ||||||||||| |  ||||||| |||||   |||||    
T  46383276 ctcaagttcataatatcttccatgagtgaataagctttgagacttatacttcctaccccaaataggatcaatcttggcgagcactgtaattccatagaga 46383375  T
Q  255 aagtatcctaaatgataatgatg 277  Q
     | ||||||||||||||||||||    
T  46383376 gaatatcctaaatgataatgatg 46383398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 3754122 - 3753994
Alignment:
Q  180 agtgaataggcttgaggcttatgctttctaccccaaattggatcaatctttggaagcactgcaattcgtaagagaaagtatcctaaatgataatgatggt 279  Q
    |||||||| ||||| || |||| ||||   ||||||| |||||||||||||| ||| || |||||||   | ||||| || ||||||||||||||||| |    
T  3754122 agtgaataagcttgtggtttatacttttgtccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgat 3754023  T
Q  280 cgttcttaattccaaacccgaaatcaaca 308  Q
    | || | ||||||||| || |||||||||    
T  3754022 cattataaattccaaaaccaaaatcaaca 3753994  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 46383132 - 46383202
Alignment:
Q  7 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattca 77  Q
    |||| ||||||||||| ||||||||||  | |||||||||  ||| ||| |||||||||||||||||||||    
T  46383132 tcaaagctgcagaatagtatgcattcaaagtttcactagtactcttttgatttcttccatcagtgaattca 46383202  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 9665602 - 9665567
Alignment:
Q  180 agtgaataggcttgaggcttatgctttctaccccaa 215  Q
    |||||||||||||||||||||| |||||||||||||    
T  9665602 agtgaataggcttgaggcttatactttctaccccaa 9665567  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 35244345 - 35244270
Alignment:
Q  154 tactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatgctttctaccccaaattggatcaatctt 229  Q
    |||||||| |||||||||| |  |||||||||||||||||||  |||| ||| ||||||||| |||||||||||||    
T  35244345 tactcaagttcataaaatctttcatgagtgaataggcttgagatttatacttcctaccccaagttggatcaatctt 35244270  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 13536626 - 13536591
Alignment:
Q  180 agtgaataggcttgaggcttatgctttctaccccaa 215  Q
    |||||||||||||||||||||| |||||||||||||    
T  13536626 agtgaataggcttgaggcttatactttctaccccaa 13536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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