View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_36 (Length: 281)
Name: NF19723_low_36
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 26156203 - 26155951
Alignment:
| Q |
10 |
ttttatctatatctaccatgataccttgatccaatataaaacccctacaataaccatattcccttctagagtttgaaatcttgagaaccttttcttcact |
109 |
Q |
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| T |
26156203 |
ttttatctacatctaccatgataccttgatccaata--aaacccctacaataaccatattcccttctagagtttgaaatcttgagaaccttttcttcact |
26156106 |
T |
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| Q |
110 |
tttttcatattgatcccttatatgttgctcatggacaagtaaggtgctttgtaaatactcaatggaagtttgtgacg-cattggattctttaatttaaca |
208 |
Q |
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| T |
26156105 |
tttgtcatattgatcccttatatgttgctcatggacaagtaaggtgctttgtaaatactcaatggaagtttgtgacgacattggattctttaatttaaca |
26156006 |
T |
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| Q |
209 |
caggacgtaatcgaatttggaagtcattgacctcaaaatattttcaacgactaag |
263 |
Q |
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| T |
26156005 |
cacaacataatcgaatttggaagtcattgacctcaaaatattttcaacgactaag |
26155951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 26178922 - 26178708
Alignment:
| Q |
49 |
aacccctacaataaccatattcccttctagagtttgaaatcttgagaaccttttcttcactttt---ttcatattgatcccttatatgttgctcatggac |
145 |
Q |
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| T |
26178922 |
aacccttacaataaccatattccctttgagagtttgaaatcttgagaaccttttcttcatttttttcttcttagtgagcccttatacgttgctcatggac |
26178823 |
T |
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| Q |
146 |
aagtaaggtgctttgtaaatactcaatgg--aagtttgtgacg-cattggattctttaatttaacacaggacgtaatcgaatttggaagtcattgacctc |
242 |
Q |
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| T |
26178822 |
aagtgaagtactttataaatagtcaatggaaaagtttgcaatgtcattggattatttaatttaacacacaacgtaatcaaatttgg-agtcatttacctc |
26178724 |
T |
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| Q |
243 |
aaaatattttcaacga |
258 |
Q |
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| T |
26178723 |
aaaatattttcaacga |
26178708 |
T |
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