View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_4 (Length: 630)
Name: NF19723_low_4
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 9 - 503
Target Start/End: Original strand, 45544643 - 45545137
Alignment:
| Q |
9 |
gagtgagatgaagcacggctggaaatagtattcccattacagccatcaacaacaagcctgagttgacaacagcagctgccttattgaaaacctgaagttt |
108 |
Q |
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| T |
45544643 |
gagtgaaatgaagcacggctggaaatagtattcccattacagccatcaacaacaagcctgagttgacaacagcagctgccttattgaaaacctgaagttt |
45544742 |
T |
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| Q |
109 |
attgtagtgaacaataccaccagtaaagaatgcacatccaaggacaagaagcatattggacaagatggaaccaagtaaagattgctgaacaacacgaatc |
208 |
Q |
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| T |
45544743 |
attgtagtgaacaataccaccagtaaagaatgcacatccaaggacaagaagcatattggacaagatggaaccaagtaaagattgctgaacaacacgaatc |
45544842 |
T |
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| Q |
209 |
atatcgcttttcaaagcgtatatagatataatcatttcagttgcatttccaaatgttgcattaagtaaacccccaagtgttggtccggtgtagaaagcaa |
308 |
Q |
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| T |
45544843 |
atatcgcttttcaaagcgtatatagatataatcatttcagttgcatttccaaatgttgcattaagtaaacccccaagtgttggtccggtgtagaaagcaa |
45544942 |
T |
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| Q |
309 |
gttgctcggtagcataacctagacgttcagccaaaggagcaatacccaataaggcgaagaaaaagacccaaacatgttttccggcagagaaatagtgtag |
408 |
Q |
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| T |
45544943 |
gttgctcggtagcataacctagacgttcagccaaaggagcaatacccaataaggcgaagaaaaagacccaaacatgttttccgccagagaaatagtgtag |
45545042 |
T |
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| Q |
409 |
gaagatggcaaaaggaccaaaggggagtaagatgttgatcttagctttgattaagacgatatatatacttttgctgattagtctagtgcgggaat |
503 |
Q |
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| T |
45545043 |
gaagatggcaaaaggaccaaaggggagtaagatgttgatcttagctttgattaagacgatatatatacttttgctgattagtctagtgcgggaat |
45545137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 612
Target Start/End: Original strand, 45545196 - 45545243
Alignment:
| Q |
562 |
gtgtggtttaacagaagaagaagaagtattagcagatgcagatgaaggtga |
612 |
Q |
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| T |
45545196 |
gtgtggtttaacagaa---gaagaagtattagcagatgtagatgaaggtga |
45545243 |
T |
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