View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_40 (Length: 250)
Name: NF19723_low_40
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39454608 - 39454368
Alignment:
| Q |
1 |
acttctgctttcttcatgttgtgagtggctctctcttttttggtggtagaagtgtgtgtgtgactctatgaatttgatatttgatgtacatgttttatta |
100 |
Q |
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| T |
39454608 |
acttctgctttcttcatgttgtgagtggctctctcttttttggtggtagaagtgtgtgtgtgactctatgaatttgatatttgatgtacatgttttatta |
39454509 |
T |
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| Q |
101 |
cataggaacaaactgaattagtgtacagaattagcatcgtttatttaccnnnnnnnngaatcagtatcatttatcatcatttatatatgtcatgtgtata |
200 |
Q |
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| T |
39454508 |
cataggaacaaaatgaattagtgtacagaattagcatcatttatttaccaaaaaaaagaatcagtatcatttatcatcatttatatatgtcatgtgtata |
39454409 |
T |
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| Q |
201 |
tggatcatgaaaattatgtgctgacaaagaattagtataat |
241 |
Q |
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| T |
39454408 |
tggatcatgaaaattatgtgctgaaaaagaattagtataat |
39454368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 39471897 - 39471821
Alignment:
| Q |
73 |
tttgatatttgatgtacatgttttattacataggaacaaactgaattagtgtacagaattagcatcgtttatttacc |
149 |
Q |
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||||| ||||||| |||||||||||||| |||||| | |||||||||||||| |||||| ||| |||||||||| |
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| T |
39471897 |
tttgacatttgatatacatgttttattatataggattaggatgaattagtgtacataattagtatcatttatttacc |
39471821 |
T |
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