View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_43 (Length: 246)
Name: NF19723_low_43
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5969550 - 5969306
Alignment:
| Q |
1 |
ttgtatttcattttcagaacctagctaataagacaatgttgtccaacctcatatatactctcaacaatttgggaattttggttaggactattcaatactg |
100 |
Q |
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| T |
5969550 |
ttgtatttcattttcagaacctagctaataagacaatgttgtccaacctcatatatactctcaacaatttgggaattttggttaggactattcaatactg |
5969451 |
T |
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| Q |
101 |
gcggaggccacggtgagaggccaaagcatgtctctcacagtccaaattgatttttcaccattagatatattaat--aaattattgtgtggttaggatgag |
198 |
Q |
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| T |
5969450 |
gcggaggctacggtgagaggccaaaacatgtctctcacggtccaaattgatttttcaccattagatatattaataaaaattattgtgtggttaggatgag |
5969351 |
T |
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| Q |
199 |
agacctgcaacttgtttccaccattttcaacggtaagtattattt |
243 |
Q |
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| T |
5969350 |
agacctgcaacttgtttccacccttttcaacggtaagtattattt |
5969306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 46089758 - 46089617
Alignment:
| Q |
100 |
ggcggaggccacggtgagaggccaaagcatgtctctcacagtccaaattgatttttcaccattagatatattaataaattattgtgtggttaggatgaga |
199 |
Q |
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| T |
46089758 |
ggcggaggctacggtgagaggccaaaatatgtctctcacggtgcaaattgatttttcaccactagatatattaataaactattgtgtgatcatgataaga |
46089659 |
T |
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| Q |
200 |
gacctgcaacttgtttccaccattttcaacggtaagtattat |
241 |
Q |
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| T |
46089658 |
gacctgcaacttgtttccaccattttcaacggtaagcattat |
46089617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 30731158 - 30731302
Alignment:
| Q |
99 |
tggcggaggccacggtgagaggccaaagcatgtctctcacagtccaaattgatttttcaccattagatatattaataaattattgtgtggttaggatgag |
198 |
Q |
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|||||||||| ||| |||||||||||| ||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30731158 |
tggcggaggctacgatgagaggccaaaacatgtctttcacggtgcaaattgatttttcgccattagatatattaataaattattgtgtggttaggatgag |
30731257 |
T |
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| Q |
199 |
agacctgcaacttgtttccaccattttcaacggtaagtattattt |
243 |
Q |
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| T |
30731258 |
agacctgcaacttgtttccacccttttcaaccgtaagtattattt |
30731302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 13610029 - 13610118
Alignment:
| Q |
100 |
ggcggaggccacggtgagaggccaaagcatgtctctcacagtccaaattgatttttcaccattagatatattaataaattattgtgtggt |
189 |
Q |
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| T |
13610029 |
ggcggaggctagcgtgagcgaccaaaacaggtctctcacagtgcaaattgaattttcaccattggatatattaattatttattatgtggt |
13610118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 33641510 - 33641599
Alignment:
| Q |
100 |
ggcggaggccacggtgagaggccaaagcatgtctctcacagtccaaattgatttttcaccattagatatattaataaattattgtgtggt |
189 |
Q |
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| T |
33641510 |
ggcggaggccagcgtgagcgaccaaaacaggtctctcacgatgcaaattgaattttcaccattggatatattaattatttattatgtggt |
33641599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 38644975 - 38645090
Alignment:
| Q |
100 |
ggcggaggccacggtgagaggccaaagcatgtctctcacagtccaaattgatttttcaccattagatatattaataaattattgtgtggttaggatgaga |
199 |
Q |
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| T |
38644975 |
ggcggaggctagcgtgagcgaccaaaacaggtctctcacggtgcaaattgagtttgcaccattagatatattaattatttattgtgcggtcaagatgatt |
38645074 |
T |
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| Q |
200 |
gacctgcaacttgttt |
215 |
Q |
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| T |
38645075 |
cacctgtaacttgttt |
38645090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 54131206 - 54131264
Alignment:
| Q |
131 |
tctctcacagtccaaattgatttttcaccattagatatattaataaattattgtgtggt |
189 |
Q |
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| T |
54131206 |
tctctcacggtgcaaattgaattttcaccattggatatattaattatttattatgtggt |
54131264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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