View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_46 (Length: 239)
Name: NF19723_low_46
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39454722 - 39454944
Alignment:
| Q |
1 |
cacacgccactgaaaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaa |
100 |
Q |
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| T |
39454722 |
cacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaaccttccagaatgctctcttcccccaaacactaa |
39454821 |
T |
|
| Q |
101 |
tccagtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454822 |
tccagtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgca |
39454921 |
T |
|
| Q |
201 |
gctttcgttgttgacatgtcctg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39454922 |
gctttcgttgttgacatgtcctg |
39454944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 39472130 - 39472337
Alignment:
| Q |
12 |
gaaaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcct |
111 |
Q |
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||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||| || | ||| |
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| T |
39472130 |
gaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccct |
39472229 |
T |
|
| Q |
112 |
ccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgcagctttcgttgt |
211 |
Q |
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| T |
39472230 |
ctatgactgcgctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgt |
39472329 |
T |
|
| Q |
212 |
tgacatgt |
219 |
Q |
| |
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|||||||| |
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| T |
39472330 |
tgacatgt |
39472337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 39451107 - 39451263
Alignment:
| Q |
25 |
acactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcc---tccatgtccgc |
121 |
Q |
| |
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|||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||| |||||||| |||||||| ||||||| || | |||||| | || |
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| T |
39451107 |
acactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgc |
39451206 |
T |
|
| Q |
122 |
tcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactgg |
178 |
Q |
| |
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|| ||| ||||||||||||||||| |||||||||||||| |||||||||| |||||| |
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|
| T |
39451207 |
tctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactgg |
39451263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 39486564 - 39486723
Alignment:
| Q |
17 |
cgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatcca-gtttcctccat |
115 |
Q |
| |
|
|||||| ||||| ||||| ||||| || |||||||| |||| ||||||||||||||||||| ||||||||||||||||| | ||| |||| || || |
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| T |
39486564 |
cgatgtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtc-at |
39486662 |
T |
|
| Q |
116 |
gtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
176 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
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|
| T |
39486663 |
gaacgctctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactact |
39486723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 39475613 - 39475767
Alignment:
| Q |
25 |
acactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccag---tttcctccatgtccgc |
121 |
Q |
| |
|
|||||||||| ||||| ||||| || || ||| ||||||||||||||||||| ||||||||||||||||| |||||| | || |||||| | || |
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| T |
39475613 |
acactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagc |
39475712 |
T |
|
| Q |
122 |
tcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
176 |
Q |
| |
|
|| ||| |||||||||||||||||||| |||||||| || || ||||||| |||| |
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| T |
39475713 |
tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactact |
39475767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 39464560 - 39464451
Alignment:
| Q |
61 |
tcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgt |
160 |
Q |
| |
|
||||||||||||||||| |||||||||| || | || |||||| |||| | ||| ||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
39464560 |
tcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgt |
39464461 |
T |
|
| Q |
161 |
atctaacctc |
170 |
Q |
| |
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||||||||| |
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| T |
39464460 |
ctctaacctc |
39464451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 39460348 - 39460508
Alignment:
| Q |
16 |
ccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccat |
115 |
Q |
| |
|
||||||| |||||||||| ||||| | || ||||| ||| ||||||||||||||||||| |||||||||||||||| | ||| |||| || |
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| T |
39460348 |
ccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaacttccagaat |
39460447 |
T |
|
| Q |
116 |
gtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
176 |
Q |
| |
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| ||| ||| |||||||||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
39460448 |
gatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactact |
39460508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 39458251 - 39458210
Alignment:
| Q |
130 |
aagctcagaaaccaaacgtcaaacaagccgtatctaacctca |
171 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||| |
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|
| T |
39458251 |
aagctcagaaaccaaacgtcaaaaaagccgtctccaacctca |
39458210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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