View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19723_low_48 (Length: 238)
Name: NF19723_low_48
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_48 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 26460218 - 26460052
Alignment:
| Q |
55 |
tagtgaatgcaaaatcaaaatctactagaagttctttttatttaaagcatacaaaaatattacaagaaaatgataaatctttacattgtaaaagagagaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26460218 |
tagtgaatgcaaaatcaaaatctacttgaagttctttttatttaaagcatacaaaaatattacaagaaaatgataaatctttacattgtaaaagagagaa |
26460119 |
T |
|
| Q |
155 |
aaatgtaaaagtacaagtcatttcagttttgagttccaaatttcccaatcttcatcaacataatttt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26460118 |
aaatgtaaaagtacaagtcatttcagttttgagttccaaatttcccaatcttcatcaacataatttt |
26460052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26460273 - 26460242
Alignment:
| Q |
1 |
cgtgttcagttacaacaagtttgtatagcacc |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26460273 |
cgtgttcagttacaacaagtttgtatagcacc |
26460242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University