View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_5 (Length: 628)
Name: NF19723_low_5
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 14 - 521
Target Start/End: Original strand, 35866274 - 35866781
Alignment:
| Q |
14 |
atgaatttccaatgtcttcctcgatggaacctcgttctttatttggtatagttatttcgtttctcctatcaaaaagataacacacaagtcaaattgcttt |
113 |
Q |
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| T |
35866274 |
atgaatttccaatgtcttcctcgatggaacctcgttctttatttggtatagttatttcgtttctcctatcaaaaagataacacacaagtcaaattgcttt |
35866373 |
T |
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| Q |
114 |
aaaagtgactaatattgcaataagttactattctgcttaagttatttaactatccaaagtttcaaacaagctcttactgtgttcaacatgtgttttttag |
213 |
Q |
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| T |
35866374 |
aaaagtgactaatattgcaataagttactattctgcttaacttatttaactatccaaagtttcaaacaagctcttactgtgttcaacatgtgttttttag |
35866473 |
T |
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| Q |
214 |
tgcctaatgacttttctatagtatagaaagtggaacttactcgtaattaacattataatcctaagtttgtaaaataaaccattagaccaagaagcttaac |
313 |
Q |
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| T |
35866474 |
tgcctaatgacttttctatagtatagaaagtggaacttactcgtaattaacattataatcctaagtttgtaaaataaaccattagaccaagaagcttaac |
35866573 |
T |
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| Q |
314 |
aggggagtaaaaaatttgatcaattgggacaattaaactcattctttggcctttgtatttgctgttatatgcacattaatgtcatatttgagtaacatat |
413 |
Q |
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| T |
35866574 |
aggggagtaaaaaatttgatcaattgggacaataaaactcattctttggtctttgtatttgctgttatatgcacattaatgtcatatttgagtaacatat |
35866673 |
T |
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| Q |
414 |
ttaactatatacaaagtttcaaactattaaacatgttcctattctggctctgcttaacttatctaaccatccatagtttcaaaccattcacaacttcaaa |
513 |
Q |
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| T |
35866674 |
ttaactatatacaaagtttcaaactattaaacatgttcctattctggctctgcttaacttatctaaccatccatagtttcaaaccattaacaacttcaaa |
35866773 |
T |
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| Q |
514 |
attacctc |
521 |
Q |
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| T |
35866774 |
attacctc |
35866781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 543 - 612
Target Start/End: Original strand, 35866808 - 35866877
Alignment:
| Q |
543 |
taattaataattagaacaaattggactcacttagcttgagattttcctttaggaagcactgtaggatctg |
612 |
Q |
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| T |
35866808 |
taattaataattagaacaaattggactcacttagcttgagattttcctttaggaagcactgtaggatctg |
35866877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 612
Target Start/End: Original strand, 34816764 - 34816810
Alignment:
| Q |
566 |
gactcacttagcttgagattttcctttaggaagcactgtaggatctg |
612 |
Q |
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| T |
34816764 |
gactcacttagcttgagattttcctttaggaagcaatgtatgatctg |
34816810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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