View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19723_low_57 (Length: 208)

Name: NF19723_low_57

Description: NF19723

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19723_low_57

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 173; E-Value: 3e-93

Query Start/End: Original strand, 18 - 194

Target Start/End: Original strand, 42307517 - 42307693

Alignment:

Q	18	tgcttaactgactaatatttaaccatgatatactctagtataaaacctatacacaattcatatatatgtttaacattgtaaaattaagcatatgatgcaa	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	42307517	tgcttaactgactaatatttaaccatgatatactctagtataaaacctatacacaattcatatatatgtttaacattgtaaaattatgcatatgatgcaa	42307616	T

Q	118	aaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttc	194	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42307617	aaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttc	42307693	T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 115 - 194

Target Start/End: Complemental strand, 51570711 - 51570635

Alignment:

Q	115	caaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttc	194	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51570711	caaaaagcaattaaattaacttttccaataattctaatgtcatca-ca--gaaattagaaaagcttaccttttttagttc	51570635	T

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