View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19723_low_7 (Length: 591)
Name: NF19723_low_7
Description: NF19723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19723_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 34865466 - 34866039
Alignment:
| Q |
1 |
gattcaaattcatggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34865466 |
gattcaaattcttggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtc |
34865565 |
T |
|
| Q |
101 |
tccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataaggaatccgtgagatatttttgcgtaacattga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34865566 |
tccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataaggaatccatgagatatttttgcgtaacattga |
34865665 |
T |
|
| Q |
201 |
atacaccatgaaaatcatacgatttcaatagcctgcaccaaaatgaaaattatttaaaaaattaaatgatttctatcatcttcatcatatgcgttgaata |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34865666 |
atacaccatgaaaatcatatgatttcaatagcctgcaccaaaatgaaaattatttaaaaaattaaatgatttctatcatcttcatcatatacgttgaata |
34865765 |
T |
|
| Q |
301 |
caataaaaactgatatggaatgtaaatatactgctatcgatgcaaataaggaggtaaacaaacatatcaacaaatatcccaaatttttattcnnnnnnng |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34865766 |
caataaaaactgatatggaatgtaaatatactgctatcgatgcaaataaggaggtaaacaaacatatcaacaaatatcccaaatttttattcaaaaaaag |
34865865 |
T |
|
| Q |
401 |
gaggagcatcaaatatttacttactctttaatcaccttctgaacttgacgaatcattatttgaaggagcctccaaagatttctttatcagaaagattgtc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34865866 |
gaggagcatcaaatatttacttactctttaatcaccttcagaacttgacgaatcgttatttgaaggagcctccaaagatttctttatcagaaagattgtc |
34865965 |
T |
|
| Q |
501 |
tgtctggaggccaagtagctccccttttctgcacactctgatatggacttctgacttgttaatgcaatgtcttt |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34865966 |
tgtctggaggccaagtagctccccttttctgcacactctgatatggacttctgacttgttaatgcaatgtcttt |
34866039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 560
Target Start/End: Original strand, 7948181 - 7948236
Alignment:
| Q |
505 |
tggaggccaagtagctccccttttctgcacactctgatatggacttctgacttgtt |
560 |
Q |
| |
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||||||||||| || || | ||||||| |||||||||||||||||||||| ||||| |
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|
| T |
7948181 |
tggaggccaagcagttcactttttctgtacactctgatatggacttctgaattgtt |
7948236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 51858077 - 51857864
Alignment:
| Q |
13 |
tggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagt |
112 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||| |||||||||||| |||||||||||||||| || | || |
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| T |
51858077 |
tggatataataactaaccataagtctcgaggaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg-catctgt |
51857979 |
T |
|
| Q |
113 |
ccctgctgccactctgcccgttcttttc--ttttataataatttatatttatatataaggaatccgtgagata-tttttgcgtaacattgaatacaccat |
209 |
Q |
| |
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|||||||| ||||||||| |||||||| |||| | |||||||||||| ||| | |||||| |||||| ||||||| |||||||||||||||||| |
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| T |
51857978 |
tcctgctgctactctgcccattcttttcttttttttgataatttatatt----tatgaagaatccacgagatattttttgcataacattgaatacaccat |
51857883 |
T |
|
| Q |
210 |
gaaaatcatacgatttcaa |
228 |
Q |
| |
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||||||||||||||||||| |
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| T |
51857882 |
gaaaatcatacgatttcaa |
51857864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 51857783 - 51857703
Alignment:
| Q |
400 |
ggaggagcatcaaatatttacttactctttaatcaccttctgaacttgacgaatcattatttgaaggagcctccaaagatt |
480 |
Q |
| |
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||||| |||||| || |||||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
51857783 |
ggaggggcatcagatgtttactcactctttaatcaccttgtgaacttgacacttcgttatttgaaggagcctccaaagatt |
51857703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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