View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_high_1 (Length: 729)
Name: NF19724_high_1
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Complemental strand, 53448146 - 53447432
Alignment:
| Q |
1 |
aacaccaacgatagataggaactgaactgtctcacgacgttctaaatttgtttcttactgaacttgacttgtccgcctttaaaactaaagagtagcttca |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53448146 |
aacaccaacggtagataggaactgaactgtctcacgacgttctaaatttgtttcttactgaacttgacttgtccgcctttaaaactaaagagtagcttca |
53448047 |
T |
|
| Q |
101 |
ccaatcgttttaacatttcttgtcagtaatcttttgcataagctgtcttctagatctattaatagtgagaaagcacaaatagatatgctcctcaagctct |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53448046 |
ccaatcgttttaatatttcttgtcagtaatcttttgcataagctgtcttctagatctgttaatagcgagaaagcacaaatagatatgctcctcaagctct |
53447947 |
T |
|
| Q |
201 |
tccaactgatccataaagttggtttgacaatcacgaaattctctcagaaccatcttcaatattacacaccttccattaccatgaccataattcttcacac |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53447946 |
tccaactgatccataaagttagtttgacaatcacgaaattctcttagaaccatcttcaatattacacaccttccattaccatgaccataattcttcacac |
53447847 |
T |
|
| Q |
301 |
aaatatcagcaacctctctacaatgttcaacctcatccgctaacctcttaaccatacggctcatagtatccaaatcatttatcactatataaaccccttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53447846 |
aaatatcagcaacctctctacaatgttcaacctcatccgctaacctcttaaccatacggctcatagtatccaaatcatttatcactatataaaccccttt |
53447747 |
T |
|
| Q |
401 |
tgcagcaacatcaatttgttcatatagattttcacaagaattatactttttattttcccacttggatctcttcttcatcaaaccaaaggatccaccgact |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53447746 |
tgcagcaacatcaatttgttcatatagtttttcacaagaattatactttttattttcccacttggatctcttcttcatcaaaccaaaggatccaccgact |
53447647 |
T |
|
| Q |
501 |
acataaggggcagcagctaacccaattatgctatggaaagcaaagactaacaaagccaccaaaagagcggtttctgaaacgactaaaccgattcctccaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53447646 |
acataaggggcagcagctaacccaattatgctatggaaagcaaagactaacaaagccaccaaaagagcggtttctgaaacgactaaaccgatccctccaa |
53447547 |
T |
|
| Q |
601 |
ctttcttgcataacctctttattgttattcttcttttgagtttcaatctctttgagttaagtttgttaagaagcactatgtgtttttcttgaatatcgcg |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
53447546 |
ctttcttgcataacctctttattgttattcttcttttgagtttcaatctctttgagttaagtctgttaaggagcgctatgtgtttttcttgaatatcgca |
53447447 |
T |
|
| Q |
701 |
gaaattaataatatt |
715 |
Q |
| |
|
||||||||||||||| |
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|
| T |
53447446 |
gaaattaataatatt |
53447432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 437
Target Start/End: Original strand, 28593339 - 28593434
Alignment:
| Q |
342 |
aacctcttaaccatacggctcatagtatccaaatcatttatcactatataaaccccttttgcagcaacatcaatttgttcatatagattttcacaa |
437 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||| |||| |||||||| |
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| T |
28593339 |
aacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaa |
28593434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28593148 - 28593221
Alignment:
| Q |
145 |
gtcttctagatctattaatagtgagaaagcacaaatagatatgctcctcaagctcttccaactgatccataaag |
218 |
Q |
| |
|
|||| |||||| |||| || || ||||||||||| || | ||| || |||||||||||||||||||||| |||| |
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| T |
28593148 |
gtctcctagatttattgatggtaagaaagcacaagtaaacatgttcttcaagctcttccaactgatccaaaaag |
28593221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 342 - 427
Target Start/End: Complemental strand, 8358234 - 8358149
Alignment:
| Q |
342 |
aacctcttaaccatacggctcatagtatccaaatcatttatcactatataaaccccttttgcagcaacatcaatttgttcatatag |
427 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| ||||||| |||| |
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| T |
8358234 |
aacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatag |
8358149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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