View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_high_10 (Length: 258)
Name: NF19724_high_10
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 7422627 - 7422786
Alignment:
| Q |
20 |
actgtggcagcacttgatgctgatgctcacaagtctctggctcaggaatatggtattagaggatttccaactataaaggcgttttcccccggaaagccac |
119 |
Q |
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| T |
7422627 |
actgtggcagcacttgatgctgatgctcacaagtctctggctcatgaatatggtattagaggatttccaactataaaggcgttttcccccggaaagccac |
7422726 |
T |
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| Q |
120 |
ccgttgattaccaaggagccagggatctgaaagcaatcacagagtttgcaattcaacagg |
179 |
Q |
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| T |
7422727 |
ccgttgattaccaaggagccagggatctgaaagcaatcacagagtttgcaattcaacagg |
7422786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 7512166 - 7512262
Alignment:
| Q |
82 |
atttccaacta-taaaggcgttttcccccggaaagccacccgttgattaccaaggagccagggatctgaaagcaatcacagagtttgcaattcaaca |
177 |
Q |
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| T |
7512166 |
atttccaactaataaaggtgtttgcccctgggaaaccaccggttgattaccaaggagccagagatgtcaaaccaatcacataatttgcacttcaaca |
7512262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 7516450 - 7516546
Alignment:
| Q |
82 |
atttccaacta-taaaggcgttttcccccggaaagccacccgttgattaccaaggagccagggatctgaaagcaatcacagagtttgcaattcaaca |
177 |
Q |
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| T |
7516450 |
atttccaactaataaaggtgtttgcccctgggaaaccaccggttgattaccaaggagccagagatgtcaaaccaatcacataatttgcacttcaaca |
7516546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 36638212 - 36638094
Alignment:
| Q |
61 |
tcaggaatatggtattagaggatttccaactataaaggcgttttcccccggaaagccacccgttgattaccaaggagccagggatctgaaagcaatcaca |
160 |
Q |
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| T |
36638212 |
tcaggaatatggtattagaggatttccaactataaaggtgttttcacctggaaaaccaccagttgattaccaaggagccagagacgttaaaccgatcgca |
36638113 |
T |
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| Q |
161 |
gagtttgcaattcaacagg |
179 |
Q |
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| T |
36638112 |
gaatttgcacttcaacagg |
36638094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36639159 - 36639114
Alignment:
| Q |
20 |
actgtggcagcacttgatgctgatgctcacaagtctctggctcagg |
65 |
Q |
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| T |
36639159 |
actgtagcagcacttgatgctgatgctcaccaatctctggctcagg |
36639114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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