View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19724_high_18 (Length: 204)

Name: NF19724_high_18
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19724_high_18
NF19724_high_18
[»] chr1 (24 HSPs)
chr1 (81-189)||(23231145-23231250)
chr1 (1-45)||(3097768-3097812)
chr1 (1-45)||(5694430-5694474)
chr1 (1-45)||(15227848-15227892)
chr1 (1-45)||(19031848-19031892)
chr1 (1-45)||(38162959-38163003)
chr1 (1-45)||(48383144-48383188)
chr1 (1-45)||(51065781-51065825)
chr1 (2-45)||(24178496-24178539)
chr1 (9-45)||(3784746-3784782)
chr1 (1-45)||(13961320-13961364)
chr1 (1-45)||(29657880-29657924)
chr1 (1-45)||(30294414-30294458)
chr1 (1-45)||(41730417-41730461)
chr1 (1-45)||(47010102-47010146)
chr1 (2-45)||(45449277-45449320)
chr1 (3-45)||(19010720-19010762)
chr1 (3-45)||(30217873-30217915)
chr1 (1-45)||(9266761-9266805)
chr1 (1-45)||(12072095-12072139)
chr1 (1-45)||(12307026-12307070)
chr1 (1-45)||(36446358-36446402)
chr1 (1-45)||(42770023-42770067)
chr1 (1-45)||(48071591-48071635)
[»] chr6 (19 HSPs)
chr6 (1-45)||(4215804-4215848)
chr6 (1-45)||(7851192-7851236)
chr6 (1-45)||(23402247-23402291)
chr6 (1-45)||(32929541-32929585)
chr6 (1-39)||(18276654-18276692)
chr6 (1-45)||(392205-392249)
chr6 (5-45)||(2581065-2581105)
chr6 (1-45)||(3515875-3515919)
chr6 (1-45)||(12145150-12145194)
chr6 (1-45)||(29451148-29451192)
chr6 (1-45)||(32985226-32985270)
chr6 (3-45)||(2350763-2350805)
chr6 (3-45)||(27433603-27433645)
chr6 (3-40)||(26467162-26467199)
chr6 (1-45)||(1391211-1391255)
chr6 (5-41)||(5323513-5323549)
chr6 (1-45)||(12525828-12525872)
chr6 (1-45)||(28564344-28564388)
chr6 (1-45)||(35043998-35044042)
[»] chr3 (19 HSPs)
chr3 (1-45)||(858698-858742)
chr3 (1-45)||(41304112-41304156)
chr3 (1-45)||(18014781-18014825)
chr3 (1-45)||(39074527-39074571)
chr3 (1-45)||(46352743-46352787)
chr3 (1-45)||(48725380-48725424)
chr3 (1-45)||(49893440-49893484)
chr3 (3-45)||(272331-272373)
chr3 (1-45)||(6842728-6842772)
chr3 (5-45)||(10617317-10617357)
chr3 (5-45)||(49529299-49529339)
chr3 (3-45)||(2505460-2505502)
chr3 (3-45)||(11308244-11308285)
chr3 (1-45)||(4168292-4168336)
chr3 (1-45)||(40362613-40362657)
chr3 (1-45)||(41553973-41554017)
chr3 (5-45)||(42548208-42548248)
chr3 (1-45)||(43786980-43787024)
chr3 (1-45)||(52520790-52520834)
[»] chr2 (24 HSPs)
chr2 (1-45)||(27856429-27856473)
chr2 (1-45)||(6580298-6580342)
chr2 (1-45)||(13574062-13574106)
chr2 (1-45)||(20553040-20553084)
chr2 (1-45)||(22068353-22068397)
chr2 (1-45)||(30486319-30486363)
chr2 (1-45)||(31390121-31390165)
chr2 (1-45)||(32360902-32360946)
chr2 (1-45)||(44588011-44588055)
chr2 (2-45)||(8969440-8969483)
chr2 (1-33)||(3668158-3668190)
chr2 (1-45)||(4381904-4381948)
chr2 (1-45)||(22887859-22887903)
chr2 (1-45)||(31438755-31438799)
chr2 (1-45)||(34442565-34442609)
chr2 (1-45)||(38590907-38590951)
chr2 (1-45)||(1859271-1859315)
chr2 (1-33)||(4022524-4022556)
chr2 (5-45)||(5093572-5093612)
chr2 (5-45)||(22567715-22567755)
chr2 (9-45)||(26387097-26387133)
chr2 (1-45)||(28601075-28601119)
chr2 (1-45)||(35851784-35851828)
chr2 (5-45)||(43637277-43637317)
[»] chr4 (18 HSPs)
chr4 (2-45)||(16820962-16821005)
chr4 (1-45)||(789563-789607)
chr4 (1-45)||(29591298-29591342)
chr4 (1-45)||(50619195-50619239)
chr4 (1-46)||(3783533-3783578)
chr4 (1-45)||(6164202-6164246)
chr4 (1-45)||(19503138-19503182)
chr4 (1-45)||(33108706-33108750)
chr4 (1-45)||(39844016-39844060)
chr4 (1-45)||(43944616-43944660)
chr4 (1-45)||(52533818-52533862)
chr4 (5-45)||(54897421-54897461)
chr4 (3-45)||(18067912-18067954)
chr4 (1-45)||(4089251-4089295)
chr4 (1-45)||(4268855-4268899)
chr4 (1-45)||(12356353-12356397)
chr4 (1-45)||(30387167-30387211)
chr4 (1-45)||(47231905-47231949)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-45)||(15005-15049)
[»] chr8 (25 HSPs)
chr8 (1-45)||(4537777-4537821)
chr8 (1-45)||(27988532-27988576)
chr8 (1-45)||(28045834-28045878)
chr8 (1-45)||(34228791-34228835)
chr8 (2-45)||(2805293-2805336)
chr8 (1-45)||(168575-168619)
chr8 (1-45)||(16890513-16890557)
chr8 (1-45)||(21595955-21595999)
chr8 (1-45)||(30675606-30675649)
chr8 (1-45)||(33357162-33357206)
chr8 (2-45)||(20831586-20831629)
chr8 (3-45)||(9537857-9537899)
chr8 (1-42)||(12203963-12204004)
chr8 (1-42)||(12448391-12448432)
chr8 (1-45)||(3930266-3930310)
chr8 (1-45)||(9253935-9253979)
chr8 (1-33)||(10870461-10870493)
chr8 (1-45)||(16394094-16394138)
chr8 (1-45)||(16888577-16888621)
chr8 (1-45)||(28626877-28626921)
chr8 (1-45)||(29444173-29444217)
chr8 (1-45)||(36730553-36730597)
chr8 (1-45)||(37373314-37373358)
chr8 (1-45)||(39406951-39406995)
chr8 (9-45)||(42035014-42035050)
[»] chr7 (15 HSPs)
chr7 (1-45)||(13064909-13064953)
chr7 (1-45)||(18486070-18486114)
chr7 (1-45)||(24438586-24438630)
chr7 (2-45)||(34606371-34606414)
chr7 (1-45)||(4628675-4628719)
chr7 (1-45)||(5239394-5239438)
chr7 (1-45)||(8754618-8754662)
chr7 (1-45)||(24798436-24798480)
chr7 (5-45)||(29993520-29993560)
chr7 (1-45)||(45045879-45045923)
chr7 (1-40)||(47839601-47839640)
chr7 (1-45)||(30810764-30810808)
chr7 (1-45)||(34333392-34333436)
chr7 (1-45)||(42044326-42044370)
chr7 (1-33)||(47083164-47083196)
[»] chr5 (8 HSPs)
chr5 (1-45)||(34650866-34650910)
chr5 (1-45)||(4268670-4268714)
chr5 (5-45)||(10956064-10956104)
chr5 (1-45)||(11958000-11958044)
chr5 (1-45)||(13661917-13661961)
chr5 (1-45)||(8787448-8787492)
chr5 (1-45)||(10054386-10054430)
chr5 (1-45)||(35504273-35504317)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-45)||(10819-10863)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-45)||(41028-41072)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-45)||(68323-68366)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-45)||(53718-53760)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-45)||(6143-6187)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-45)||(95618-95662)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-45)||(116313-116357)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 23231250 - 23231145
Alignment:
Q  81 gtttgtgtacttgtcaagtaagagacttggtatatataagaactagtcaactaggtactaatgatataattttttatatgtttcacaaaaaacaaattga 180  Q
    |||||||||||  |||||||||||||||||||| ||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23231250 gtttgtgtactcttcaagtaagagacttggtatgtattagaa---gtcaactaggtactaatgatataattttttatatgtttcacaaaaaacaaattga 23231154  T
Q  181 ggacttttt 189  Q
     ||||||||    
T  23231153 tgacttttt 23231145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3097768 - 3097812
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  3097768 acagttttcttttatggtaataatttccttttatggtatgcttaa 3097812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5694430 - 5694474
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  5694430 acagtttccttttatggtaataattcccttttatggtatgcttaa 5694474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15227848 - 15227892
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  15227848 acagtttccttttatggtaataattcccttttatggtatgcttaa 15227892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19031892 - 19031848
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||||||| | |||||||||    
T  19031892 acagtttccttttatggtaataatttccttttatgatatgcttaa 19031848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38162959 - 38163003
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  38162959 acagtttccttttatggtaataattcccttttatggtatgcttaa 38163003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48383188 - 48383144
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  48383188 acagtttccttttatggtaataattcccttttatggtatgcttaa 48383144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51065825 - 51065781
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  51065825 acagtttccttttatggtaataattcccttttatggtatgcttaa 51065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 24178539 - 24178496
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  24178539 cagtttccttttatggtaataatttcattttatggtatgcttaa 24178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 3784782 - 3784746
Alignment:
Q  9 cttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3784782 cttttatggtaataatttccttttatggtatgcttaa 3784746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13961320 - 13961364
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||    
T  13961320 acagtttcattttatggtaataattttcttttatggtatgcttaa 13961364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29657880 - 29657924
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||    
T  29657880 acagtttccttttttggtaataattcccttttatggtatgcttaa 29657924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30294458 - 30294414
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||    
T  30294458 acagtttctttttatggtaataattcccttttatggtatgcttaa 30294414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41730417 - 41730461
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||    
T  41730417 acagtttccttttatgataataattcccttttatggtatgcttaa 41730461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47010102 - 47010146
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  47010102 acagtttccttttatggtaataattctcttttatggtatgcttaa 47010146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 45449320 - 45449277
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||    
T  45449320 cagtttccttttatggtaataattgccttttatggtatgtttaa 45449277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 19010762 - 19010720
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  19010762 agtttccttttatggtaataattcccttttatggtatgattaa 19010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 30217873 - 30217915
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||    
T  30217873 agttttcttttatggtaataatttctttttatggtatgcttaa 30217915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9266805 - 9266761
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| ||||| |||||    
T  9266805 acagtttccttttatggtaataattcgcttttatggtatacttaa 9266761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12072139 - 12072095
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| | ||||| |||||||||||    
T  12072139 acagttttcttttatggtaataattcctttttatggtatgcttaa 12072095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12307026 - 12307070
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||| ||||||||||||||||||||  |||||| |||||||||||    
T  12307026 acagattccttttatggtaataattctcttttatggtatgcttaa 12307070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36446402 - 36446358
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||| ||||||||| ||||||| |||||| ||||    
T  36446402 acagtttccttttatagtaataattcccttttatggtatgtttaa 36446358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42770067 - 42770023
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||   ||||| |||||||||||    
T  42770067 acagtttccttttatggtaataattctattttatggtatgcttaa 42770023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48071591 - 48071635
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  ||||||  ||||||||||    
T  48071591 acagtttccttttatggtaataattatcttttatagtatgcttaa 48071635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4215804 - 4215848
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  4215804 acagtttccttttatggtaataatttccttttatggtatgcttaa 4215848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7851236 - 7851192
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  7851236 acagtttccttttatggtaataattcccttttatggtatgcttaa 7851192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23402247 - 23402291
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  23402247 acagtttccttttatggtaataattaccttttatggtatgcttaa 23402291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32929585 - 32929541
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  32929585 acagtttccttttatggtaataattcccttttatggtatgcttaa 32929541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18276692 - 18276654
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  18276692 acagtttccttttatggtaataatttccttttatggtat 18276654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 392205 - 392249
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  392205 acagtttccttttatggtaataattctcttttatggtatgcttaa 392249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 2581065 - 2581105
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  2581065 tttccttttatggtaataattcccttttatggtatgcttaa 2581105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3515875 - 3515919
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||    
T  3515875 acagtttccttttatggtaataattcccttttatggtatgtttaa 3515919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12145194 - 12145150
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||    
T  12145194 acagtttccttttatgataataatttccttttatagtatgcttaa 12145150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29451192 - 29451148
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||    
T  29451192 acagtttccttttatgataataattcccttttatggtatgcttaa 29451148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32985270 - 32985226
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||    
T  32985270 acagtttccttttatgataataattcccttttatggtatgcttaa 32985226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 2350763 - 2350805
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| | |||||||||    
T  2350763 agtttccttttatggtaataattcccttttatgatatgcttaa 2350805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 27433603 - 27433645
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  27433603 agtttccttttatggtaataattcccttttatggtatgtttaa 27433645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 26467199 - 26467162
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatg 40  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  26467199 agtttccttttatggtaataattcccttttatggtatg 26467162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1391255 - 1391211
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| |||||||| |||||||| ||||||| |||||||||||    
T  1391255 acagttttcttttatgataataattcccttttatggtatgcttaa 1391211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 5323513 - 5323549
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgc 41  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  5323513 tttccttttatggtaataattcccttttatggtatgc 5323549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12525828 - 12525872
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| |||||||||||||||| ||||||| | |||||||||    
T  12525828 acagtttcattttatggtaataattcccttttatgatatgcttaa 12525872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28564344 - 28564388
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||||  ||||| |||||    
T  28564344 acagtttccttttatggtaataaattccttttttggtatccttaa 28564388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35043998 - 35044042
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||    
T  35043998 acagttttcttttatggtaataattctcttttatggtatgcttaa 35044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 858698 - 858742
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  858698 acagtttccttttatggtaataatttccttttatggtatgcttaa 858742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41304112 - 41304156
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  41304112 acagtttccttttatggtaataatttccttttatggtatgcttaa 41304156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18014781 - 18014825
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||||||||||| |||||||||||    
T  18014781 acagtttccttttatgataataatttccttttatggtatgcttaa 18014825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39074527 - 39074571
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  39074527 acagtttccttttatggtaataattcccttttatggtatgcttaa 39074571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46352743 - 46352787
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  46352743 acagtttccttttatggtaataattcccttttatggtatgcttaa 46352787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48725380 - 48725424
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  48725380 acagtttccttttatggtaataattcccttttatggtatgcttaa 48725424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49893440 - 49893484
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  49893440 acagtttccttttatggtaataattcccttttatggtatgcttaa 49893484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 272331 - 272373
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  272331 agtttccttttatggtaataattcccttttatggtatgcttaa 272373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6842728 - 6842772
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| || |||| |||||||||||    
T  6842728 acagtttccttttatggtaataattcccatttatggtatgcttaa 6842772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 10617357 - 10617317
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  10617357 tttccttttatggtaataattcccttttatggtatgcttaa 10617317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 49529339 - 49529299
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  49529339 tttccttttatggtaataatttccttttatggtatgtttaa 49529299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 2505460 - 2505502
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  2505460 agtttccttttatggtaataattcccttttatggtatgtttaa 2505502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11308285 - 11308244
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  11308285 agtttccttttatggtaataa-ttccttttatggtatgcttaa 11308244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4168292 - 4168336
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||    
T  4168292 acagttttcttttatggtaataattctcttttatggtatgcttaa 4168336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40362657 - 40362613
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||    
T  40362657 acagttttcttttatggtaataattctcttttatggtatgcttaa 40362613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41554017 - 41553973
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||   ||||| |||||||||||    
T  41554017 acagtttccttttatggtaataattattttttatggtatgcttaa 41553973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42548208 - 42548248
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  42548208 tttcattttatggtaataattcccttttatggtatgcttaa 42548248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43786980 - 43787024
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||   ||||| |||||||||||    
T  43786980 acagtttccttttatggtaataattctattttatggtatgcttaa 43787024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 52520790 - 52520834
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||   ||||| |||||||||||    
T  52520790 acagtttccttttatggtaataattctattttatggtatgcttaa 52520834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27856473 - 27856429
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  27856473 acagtttccttttatggtaataatttccttttatggtatgcttaa 27856429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6580298 - 6580342
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  6580298 acagtttccttttatggtaataattcccttttatggtatgcttaa 6580342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13574106 - 13574062
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  13574106 acagtttctttttatggtaataatttccttttatggtatgcttaa 13574062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20553040 - 20553084
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  20553040 acagtttccttttatggtaataattcccttttatggtatgcttaa 20553084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22068397 - 22068353
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  22068397 acagtttccttttatggtaataattcccttttatggtatgcttaa 22068353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30486319 - 30486363
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  30486319 acagtttccttttatggtaataattcccttttatggtatgcttaa 30486363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31390121 - 31390165
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  31390121 acagtttccttttatggtaataattcccttttatggtatgcttaa 31390165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32360946 - 32360902
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  32360946 acagtttccttttatggtaataattcccttttatggtatgcttaa 32360902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44588011 - 44588055
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  44588011 acagtttccttttatggtaataattcccttttatggtatgcttaa 44588055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 8969483 - 8969440
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||||||  ||||||||||    
T  8969483 cagtttccttttatggtaataatttccttttatagtatgcttaa 8969440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3668190 - 3668158
Alignment:
Q  1 acagtttccttttatggtaataatttcctttta 33  Q
    |||||||||||||||||||||||||||||||||    
T  3668190 acagtttccttttatggtaataatttcctttta 3668158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4381904 - 4381948
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||    
T  4381904 acagtttccttttatggtaataattccattttatggtatgcttaa 4381948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22887859 - 22887903
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  22887859 acagtttccttttatggtaataattctcttttatggtatgcttaa 22887903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31438755 - 31438799
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||    
T  31438755 acagtttccttttatgataataattcccttttatggtatgcttaa 31438799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34442609 - 34442565
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  34442609 acagttttcttttatggtaataattcccttttatggtatgcttaa 34442565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38590951 - 38590907
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  38590951 acagttttcttttatggtaataattcccttttatggtatgcttaa 38590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1859271 - 1859315
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||    
T  1859271 acagttttcttttatggtaataattctcttttatggtatgcttaa 1859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4022556 - 4022524
Alignment:
Q  1 acagtttccttttatggtaataatttcctttta 33  Q
    |||||||||||||||| ||||||||||||||||    
T  4022556 acagtttccttttatgataataatttcctttta 4022524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 5093612 - 5093572
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  5093612 tttccttttatgataataatttccttttatggtatgtttaa 5093572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 22567715 - 22567755
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  22567715 tttccttttatggtaataattctcttttatggtatgcttaa 22567755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 26387133 - 26387097
Alignment:
Q  9 cttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  26387133 cttttatggtaataattcccttttatggtatgcttaa 26387097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28601075 - 28601119
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| ||||||||||||||||  |||||| |||||||||||    
T  28601075 acagtttctttttatggtaataattctcttttatggtatgcttaa 28601119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35851828 - 35851784
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| ||||||||||||||||  |||||| |||||||||||    
T  35851828 acagtttcattttatggtaataattctcttttatggtatgcttaa 35851784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43637277 - 43637317
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  43637277 tttctttttatggtaataatttccttttacagtatgtttaa 43637317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16820962 - 16821005
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  16820962 cagtttccttttatggtaataatttccttttatggtatgcttaa 16821005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 789607 - 789563
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  789607 acagtttccttttatggtaataattcccttttatggtatgcttaa 789563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29591298 - 29591342
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  29591298 acagtttccttttatggtaataattaccttttatggtatgcttaa 29591342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50619195 - 50619239
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  50619195 acagtttccttttatggtaataattcccttttatggtatgcttaa 50619239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3783578 - 3783533
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaag 46  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  3783578 acagttttcttttatggtaataattcccttttatggtatgcttaag 3783533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6164202 - 6164246
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  6164202 acagtttccttttatggtaataattctcttttatggtatgcttaa 6164246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19503182 - 19503138
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||    
T  19503182 acagtttccttttattgtaataattcccttttatggtatgcttaa 19503138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33108750 - 33108706
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||    
T  33108750 acagtttccttttatggtaataattcctttttatggtatgcttaa 33108706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39844016 - 39844060
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||    
T  39844016 acagtttccttttatggtaataattcctttttagggtatgcttaa 39844060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43944616 - 43944660
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| |||| || |||||||||||    
T  43944616 acagtttccttttatggtaataattcccttgtatggtatgcttaa 43944660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52533862 - 52533818
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||    
T  52533862 acagtttccttttatggtaataattcccttttatggtatgtttaa 52533818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 54897421 - 54897461
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  54897421 tttccttttatggtaataatttccttttatggtatgtttaa 54897461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 18067954 - 18067912
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  18067954 agtttccttttatggtaataattcccttttatggtatgtttaa 18067912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4089251 - 4089295
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||| ||||    
T  4089251 acagtttccttttatggtaataattctcttttatggtatgtttaa 4089295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4268899 - 4268855
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| |||||||||||||||| ||||||| |||||| ||||    
T  4268899 acagtttctttttatggtaataattcccttttatggtatgattaa 4268855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12356353 - 12356397
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||    
T  12356353 acagtttccttttatgataataattctcttttatggtatgcttaa 12356397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30387211 - 30387167
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| | |||||||||    
T  30387211 acagtttccttttatggtaataattcctttttatgatatgcttaa 30387167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47231949 - 47231905
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||| ||||    
T  47231949 acagtttccttttatgataataattcccttttatggtatgtttaa 47231905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15005 - 15049
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  15005 acagtttccttttatggtaataattcccttttatggtatgcttaa 15049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4537821 - 4537777
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  4537821 acagtttccttttatggtaataattcccttttatggtatgcttaa 4537777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27988576 - 27988532
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  27988576 acagtttccttttatggtaataattcccttttatggtatgcttaa 27988532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28045878 - 28045834
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  28045878 acagtttccttttatggtaataattcccttttatggtatgcttaa 28045834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34228791 - 34228835
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  34228791 acagtttccttttatggtaataattcccttttatggtatgcttaa 34228835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 2805336 - 2805293
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  2805336 cagtttccttttatggtaataattcccttttatggtatgcttaa 2805293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 168575 - 168619
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||    
T  168575 acagtttccttttatggtaataattccattttatggtatgcttaa 168619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16890557 - 16890513
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||    
T  16890557 acagtttccttttatggtaataattcctttttatggtatgcttaa 16890513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21595955 - 21595999
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  21595955 acagtttccttttatggtattaattcccttttatggtatgcttaa 21595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30675649 - 30675606
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  30675649 acagtttccttttatggtaataa-ttccttttatggtatgcttaa 30675606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33357206 - 33357162
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  33357206 acagtttccttttatggtaataattctcttttatggtatgcttaa 33357162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 20831629 - 20831586
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  20831629 cagtttccttttatggtaataattctcttttatggtatgcttaa 20831586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 9537899 - 9537857
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||| |||||| ||||||||||||||||| |||||||||||    
T  9537899 agtttctttttatagtaataatttccttttatggtatgcttaa 9537857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12203963 - 12204004
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgct 42  Q
    |||||||||||||||| |||||||| ||||||| ||||||||    
T  12203963 acagtttccttttatgataataattcccttttatggtatgct 12204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12448391 - 12448432
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgct 42  Q
    |||||||||||||||| |||||||| ||||||| ||||||||    
T  12448391 acagtttccttttatgataataattcccttttatggtatgct 12448432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3930310 - 3930266
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||| || |||||||||||||||| | |||||||||    
T  3930310 acagtttccttttttgataataatttccttttatgatatgcttaa 3930266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9253979 - 9253935
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||| |||||||||  |||||| |||||||||||    
T  9253979 acagtttccttttatagtaataattctcttttatggtatgcttaa 9253935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10870461 - 10870493
Alignment:
Q  1 acagtttccttttatggtaataatttcctttta 33  Q
    ||||||||||||||||||||||||| |||||||    
T  10870461 acagtttccttttatggtaataattccctttta 10870493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16394138 - 16394094
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||    
T  16394138 acagtttccttttatgctaataattctcttttatggtatgcttaa 16394094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16888621 - 16888577
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||  |||||||||||    
T  16888621 acagtttccttttatggtaataattctcttttgtggtatgcttaa 16888577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28626877 - 28626921
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| ||||||| |||||||| ||||||| |||||||||||    
T  28626877 acagtttctttttatgataataattcccttttatggtatgcttaa 28626921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29444217 - 29444173
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||||| |||||| ||||    
T  29444217 acagttttcttttatggtaataattcccttttatggtatgtttaa 29444173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36730553 - 36730597
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  ||||||  ||||||||||    
T  36730553 acagtttccttttatggtaataattctcttttatagtatgcttaa 36730597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37373314 - 37373358
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||| | |||||||||||    
T  37373314 acagttttcttttatggtaataattccctttcatggtatgcttaa 37373358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39406951 - 39406995
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||| ||||    
T  39406951 acagtttccttttatgataataattcccttttatggtatgtttaa 39406995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 42035050 - 42035014
Alignment:
Q  9 cttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  42035050 cttttatggtaataattcccttttatggtatgcttaa 42035014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13064953 - 13064909
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  13064953 acagtttccttttatggtaataattcccttttatggtatgcttaa 13064909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18486070 - 18486114
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  18486070 acagtttccttttatggtaataatttcattttatggtatgcttaa 18486114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24438586 - 24438630
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  24438586 acagtttccttttatggtaataattcccttttatggtatgcttaa 24438630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 34606371 - 34606414
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  34606371 cagtttccttttatggtaataattaccttttatggtatgcttaa 34606414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4628675 - 4628719
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  4628675 acagtttacttttatggtaataattcccttttatggtatgcttaa 4628719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5239394 - 5239438
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||    
T  5239394 acagtttctttttatggtaataattcccttttatggtatgcttaa 5239438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8754662 - 8754618
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||  |||||||||||||||||||||||| |||||||||||    
T  8754662 acagttttgttttatggtaataatttccttttatggtatgcttaa 8754618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24798480 - 24798436
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||    
T  24798480 acagtttccttttatggtaataattcccttttatagtatgcttaa 24798436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29993560 - 29993520
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  29993560 tttccttttatggtaataattcccttttatggtatgcttaa 29993520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45045879 - 45045923
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||    
T  45045879 acagtttccttttatgataataattcccttttatggtatgcttaa 45045923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47839601 - 47839640
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatg 40  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  47839601 acagtttccttttatggtaataattcccttttatggtatg 47839640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30810764 - 30810808
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| |||||||||||||||||| |||||| |||||| ||||    
T  30810764 acagttttcttttatggtaataattttcttttatggtatgtttaa 30810808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34333392 - 34333436
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||    
T  34333392 acagtttccttttatggtaataattcctttttatggtatgtttaa 34333436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42044370 - 42044326
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||||| |||||| ||||    
T  42044370 acagttttcttttatggtaataattcccttttatggtatgtttaa 42044326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47083164 - 47083196
Alignment:
Q  1 acagtttccttttatggtaataatttcctttta 33  Q
    ||||||||||||||||||||||||| |||||||    
T  47083164 acagtttccttttatggtaataattccctttta 47083196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34650910 - 34650866
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  34650910 acagtttccttttatggtaataattcccttttatggtatgcttaa 34650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4268670 - 4268714
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||| |||||  |||||||||||    
T  4268670 acagtttccttttatggtaataattttcttttttggtatgcttaa 4268714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10956064 - 10956104
Alignment:
Q  5 tttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  10956064 tttccttttatggtaataatttccttttatgatatgcttaa 10956104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11958044 - 11958000
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||    
T  11958044 acagtttccttttatggtaataattcccttttatggcatgcttaa 11958000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13661917 - 13661961
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||||||||||||  |||||| |||||||||||    
T  13661917 acagtttccttttatggtaataattctcttttatggtatgcttaa 13661961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8787448 - 8787492
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| | ||||| |||||||||||    
T  8787448 acagtttccttttatgataataattccattttatggtatgcttaa 8787492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10054430 - 10054386
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||    
T  10054430 acagtttccttttatggtaataattcctttttatggtatgtttaa 10054386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35504317 - 35504273
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||| |||||||||| ||||||| ||||||| |||||||||||    
T  35504317 acagttcccttttatggcaataattcccttttatggtatgcttaa 35504273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10819 - 10863
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||| || |||| |||||||||||    
T  10819 acagtttccttttatggtaataattcccatttatggtatgcttaa 10863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41028 - 41072
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||||||||||| | |||||||||    
T  41028 acagtttccttttatgataataatttccttttatgatatgcttaa 41072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 68366 - 68323
Alignment:
Q  2 cagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||    
T  68366 cagtttccttttaaggtaataattcccttttatggtatgcttaa 68323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 53760 - 53718
Alignment:
Q  3 agtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  53760 agtttccttttatggtaataattcccttttatggtatgtttaa 53718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6187 - 6143
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||||||||||||||||||||  ||||||| |||||| ||||    
T  6187 acagtttccttttatggtaataatccccttttatggtatgtttaa 6143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 95662 - 95618
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    ||||||| ||||||||||||||||| ||||||| |||||| ||||    
T  95662 acagttttcttttatggtaataattcccttttatggtatgtttaa 95618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 116313 - 116357
Alignment:
Q  1 acagtttccttttatggtaataatttccttttacggtatgcttaa 45  Q
    |||||||||||||||| |||||||| ||||||| |||||| ||||    
T  116313 acagtttccttttatgataataattcccttttatggtatgtttaa 116357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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