View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_high_4 (Length: 461)
Name: NF19724_high_4
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 90 - 448
Target Start/End: Original strand, 2666222 - 2666566
Alignment:
| Q |
90 |
tgagataaccataagaggaaagattctagcgagtaaacctgctaattcaatttgaaaaagaaaaatggcatcccacgaccaaagttacaaagctggtgaa |
189 |
Q |
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| T |
2666222 |
tgagataaccataagaggaaagattctagcgagtaaacctgctatttcaatttgaaaaagaaaaatggcttcccacgaccaaagttacaaagctggtgaa |
2666321 |
T |
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| Q |
190 |
accatgggcagaactgaggtacaataaatatcattcacaatttctatctgtatatttttcattcattcaacctaattcttccattttcttgctcaagatt |
289 |
Q |
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| T |
2666322 |
accatgggcagaactgaggtacaataaatatcattcacaatttctatctctatatttttcattcactcaacctaattcttccatttttttgctcaagatt |
2666421 |
T |
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| Q |
290 |
tatcatcttttgaggggaagatttatcatcttgaatgtaaatgatacatgttacacaatattttttgttaatataaataacagctttttgtgggataaaa |
389 |
Q |
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| T |
2666422 |
tatcatcttttgaggggaagatttatcatcttgaatg--------------tacacaatattttttgttaatatacataacagctttttgtgggataaaa |
2666507 |
T |
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| Q |
390 |
atcttatgtcttggtaagtgttcagcaaaataagtactagaaaactgctaccaacatat |
448 |
Q |
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| T |
2666508 |
atcttatgtcttagtaagtattcagcaaaataagtactagaaaactgctaccaacatat |
2666566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 2681679 - 2681769
Alignment:
| Q |
139 |
atttgaaaaagaaaaatggcatcccacgaccaaagttacaaagctggtgaaaccatgggcagaactgaggtacaa-taaatatcattcaca |
228 |
Q |
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| T |
2681679 |
atttgaagaagaaagatggcatcccacaatcagagctacaaagctggtgaaaccatgggccgaactgaggtataacaaaatatcattcaca |
2681769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 2666148 - 2666181
Alignment:
| Q |
18 |
atacatgactcatgaaatactataaatagaacat |
51 |
Q |
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| T |
2666148 |
atacatgactcatgaaatactataaatagaacat |
2666181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 2675368 - 2675439
Alignment:
| Q |
139 |
atttgaaaaagaaaaatggcatcccacgaccaaagttacaaagctggtgaaaccatgggcagaactgaggta |
210 |
Q |
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| T |
2675368 |
atttgaagaagaaagatggcatcccaagatcagagcttcaaagctggtgagaccatgggtcgaactgaggta |
2675439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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