View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19724_low_10 (Length: 314)

Name: NF19724_low_10
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19724_low_10
NF19724_low_10
[»] chr7 (26 HSPs)
chr7 (10-297)||(33266308-33266595)
chr7 (126-200)||(19302482-19302556)
chr7 (130-198)||(9210902-9210970)
chr7 (124-207)||(11619070-11619153)
chr7 (124-200)||(4970711-4970787)
chr7 (153-200)||(44822062-44822109)
chr7 (18-79)||(119877-119938)
chr7 (159-208)||(37064379-37064428)
chr7 (124-200)||(18962502-18962578)
chr7 (172-208)||(40371565-40371601)
chr7 (10-74)||(45806524-45806588)
chr7 (161-200)||(1418531-1418570)
chr7 (153-208)||(11782954-11783009)
chr7 (153-200)||(22283565-22283612)
chr7 (155-198)||(33673183-33673226)
chr7 (153-200)||(34036021-34036068)
chr7 (162-201)||(44917444-44917483)
chr7 (162-205)||(47046022-47046065)
chr7 (170-208)||(529483-529521)
chr7 (172-206)||(28340990-28341024)
chr7 (170-200)||(40598404-40598434)
chr7 (126-200)||(46407310-46407384)
chr7 (153-198)||(18765388-18765433)
chr7 (169-209)||(25596152-25596192)
chr7 (124-196)||(33678855-33678927)
chr7 (170-206)||(34083521-34083557)
[»] chr4 (44 HSPs)
chr4 (150-208)||(27043741-27043799)
chr4 (128-199)||(15173223-15173294)
chr4 (138-200)||(17822784-17822846)
chr4 (154-200)||(42403942-42403988)
chr4 (153-200)||(41336864-41336911)
chr4 (153-200)||(54426147-54426194)
chr4 (125-198)||(22538998-22539071)
chr4 (153-198)||(52315118-52315163)
chr4 (151-200)||(55437178-55437227)
chr4 (154-206)||(35571544-35571596)
chr4 (150-194)||(49003800-49003844)
chr4 (172-207)||(679837-679872)
chr4 (165-208)||(1133044-1133087)
chr4 (161-208)||(3639079-3639126)
chr4 (153-200)||(8705045-8705092)
chr4 (169-200)||(17975256-17975287)
chr4 (153-200)||(21731575-21731622)
chr4 (171-206)||(21953395-21953430)
chr4 (161-200)||(25717705-25717744)
chr4 (161-200)||(29126182-29126221)
chr4 (153-192)||(29657488-29657527)
chr4 (165-200)||(32769495-32769530)
chr4 (153-200)||(39691068-39691115)
chr4 (153-200)||(44797984-44798031)
chr4 (153-200)||(49940086-49940133)
chr4 (162-200)||(825408-825446)
chr4 (135-205)||(2244137-2244207)
chr4 (170-203)||(3891712-3891745)
chr4 (10-79)||(7601718-7601787)
chr4 (173-206)||(19039566-19039599)
chr4 (159-200)||(25571369-25571410)
chr4 (155-200)||(29388720-29388765)
chr4 (155-200)||(53294033-53294078)
chr4 (173-206)||(53315450-53315483)
chr4 (161-206)||(54575516-54575561)
chr4 (153-197)||(1408061-1408105)
chr4 (170-206)||(7367967-7368003)
chr4 (153-205)||(13126490-13126542)
chr4 (153-209)||(18815127-18815183)
chr4 (153-209)||(24169367-24169423)
chr4 (172-200)||(24193655-24193683)
chr4 (170-206)||(25309313-25309349)
chr4 (10-70)||(42404049-42404109)
chr4 (128-200)||(55414332-55414404)
[»] chr5 (39 HSPs)
chr5 (155-200)||(39594913-39594958)
chr5 (61-200)||(12857257-12857398)
chr5 (161-210)||(14331478-14331527)
chr5 (153-206)||(34736440-34736493)
chr5 (126-205)||(32941546-32941626)
chr5 (150-210)||(35299866-35299926)
chr5 (153-209)||(41419423-41419479)
chr5 (153-209)||(41534542-41534598)
chr5 (170-209)||(14932417-14932456)
chr5 (153-199)||(9107194-9107240)
chr5 (153-198)||(7674751-7674796)
chr5 (153-210)||(7705907-7705964)
chr5 (171-208)||(9174938-9174975)
chr5 (153-197)||(11064770-11064814)
chr5 (18-200)||(16937802-16937986)
chr5 (157-197)||(22209746-22209786)
chr5 (161-200)||(499650-499689)
chr5 (153-200)||(3932595-3932642)
chr5 (153-200)||(10640057-10640104)
chr5 (153-192)||(12425677-12425716)
chr5 (162-200)||(17369316-17369354)
chr5 (158-200)||(32010054-32010096)
chr5 (162-200)||(36796626-36796664)
chr5 (170-208)||(42646791-42646829)
chr5 (155-192)||(4625835-4625872)
chr5 (153-198)||(6096651-6096696)
chr5 (155-196)||(9202671-9202712)
chr5 (155-200)||(32942700-32942745)
chr5 (128-201)||(42582606-42582679)
chr5 (172-208)||(8651263-8651299)
chr5 (153-201)||(11700266-11700314)
chr5 (124-200)||(12857624-12857700)
chr5 (170-202)||(14257569-14257601)
chr5 (162-198)||(14706205-14706241)
chr5 (128-188)||(15015922-15015982)
chr5 (160-200)||(32197844-32197884)
chr5 (171-199)||(35963351-35963379)
chr5 (124-200)||(41535456-41535532)
chr5 (164-200)||(42647005-42647041)
[»] chr2 (36 HSPs)
chr2 (124-200)||(27317454-27317530)
chr2 (124-200)||(4607000-4607076)
chr2 (124-200)||(18179024-18179100)
chr2 (128-200)||(30331830-30331902)
chr2 (150-200)||(15305775-15305825)
chr2 (150-206)||(2416414-2416470)
chr2 (153-209)||(3312181-3312237)
chr2 (126-198)||(42419870-42419942)
chr2 (157-200)||(31744406-31744449)
chr2 (153-208)||(39073613-39073668)
chr2 (161-202)||(22878210-22878251)
chr2 (161-198)||(28803451-28803488)
chr2 (170-206)||(6772446-6772482)
chr2 (153-209)||(7928208-7928264)
chr2 (162-202)||(18525158-18525198)
chr2 (126-206)||(23974406-23974486)
chr2 (169-200)||(3078527-3078558)
chr2 (153-200)||(10619139-10619186)
chr2 (161-200)||(15370242-15370281)
chr2 (126-201)||(20952432-20952507)
chr2 (153-200)||(26202132-26202179)
chr2 (150-197)||(31561664-31561711)
chr2 (133-200)||(44119866-44119933)
chr2 (160-194)||(26548564-26548598)
chr2 (170-208)||(35329729-35329767)
chr2 (162-200)||(40837356-40837394)
chr2 (18-72)||(41407042-41407096)
chr2 (171-200)||(750856-750885)
chr2 (161-206)||(4350802-4350847)
chr2 (124-200)||(26143561-26143635)
chr2 (161-194)||(35809979-35810012)
chr2 (162-199)||(40059381-40059418)
chr2 (162-199)||(40085281-40085318)
chr2 (153-198)||(44590128-44590173)
chr2 (162-206)||(2964722-2964766)
chr2 (170-202)||(13866999-13867031)
[»] chr8 (26 HSPs)
chr8 (153-200)||(38602431-38602478)
chr8 (126-200)||(30251373-30251447)
chr8 (10-209)||(10758167-10758367)
chr8 (126-198)||(43717855-43717927)
chr8 (126-205)||(36963268-36963347)
chr8 (153-201)||(1096594-1096642)
chr8 (172-208)||(5088243-5088279)
chr8 (136-208)||(29818855-29818927)
chr8 (161-212)||(2487915-2487966)
chr8 (153-200)||(9130238-9130285)
chr8 (153-200)||(32213223-32213270)
chr8 (153-200)||(35534532-35534579)
chr8 (124-198)||(39551130-39551205)
chr8 (162-200)||(2606162-2606200)
chr8 (161-199)||(4560614-4560652)
chr8 (126-200)||(15180617-15180690)
chr8 (162-208)||(29417522-29417568)
chr8 (158-200)||(35374371-35374413)
chr8 (153-199)||(40859703-40859749)
chr8 (154-200)||(42893409-42893455)
chr8 (153-198)||(12496993-12497038)
chr8 (162-191)||(23996557-23996586)
chr8 (153-209)||(1057987-1058043)
chr8 (170-210)||(10727465-10727505)
chr8 (161-209)||(35928640-35928688)
chr8 (124-200)||(41589661-41589737)
[»] chr6 (26 HSPs)
chr6 (153-206)||(21405067-21405120)
chr6 (124-206)||(10645298-10645380)
chr6 (155-200)||(35069531-35069576)
chr6 (157-201)||(4163261-4163305)
chr6 (157-201)||(4224882-4224926)
chr6 (170-202)||(31776189-31776221)
chr6 (163-207)||(33027706-33027750)
chr6 (126-201)||(33089582-33089658)
chr6 (124-187)||(2455334-2455397)
chr6 (161-200)||(2457053-2457092)
chr6 (153-208)||(6536716-6536771)
chr6 (154-205)||(18612411-18612462)
chr6 (154-200)||(835180-835226)
chr6 (170-200)||(9202904-9202934)
chr6 (10-72)||(18076155-18076217)
chr6 (14-72)||(24626258-24626316)
chr6 (138-200)||(24982794-24982856)
chr6 (174-208)||(29249518-29249552)
chr6 (154-200)||(34404645-34404691)
chr6 (153-202)||(32729060-32729109)
chr6 (153-198)||(35071598-35071643)
chr6 (161-193)||(2455922-2455954)
chr6 (171-207)||(10452333-10452369)
chr6 (170-198)||(12111088-12111116)
chr6 (168-200)||(19800376-19800408)
chr6 (160-200)||(30536884-30536924)
[»] chr3 (39 HSPs)
chr3 (126-199)||(584123-584196)
chr3 (126-199)||(24085258-24085331)
chr3 (127-204)||(34610721-34610798)
chr3 (153-200)||(16072960-16073007)
chr3 (153-200)||(25447164-25447211)
chr3 (14-97)||(36631075-36631158)
chr3 (126-200)||(42799885-42799960)
chr3 (163-201)||(26990143-26990181)
chr3 (164-206)||(31615473-31615515)
chr3 (153-198)||(18405752-18405797)
chr3 (157-198)||(26911699-26911740)
chr3 (165-206)||(32663754-32663795)
chr3 (156-197)||(33405114-33405155)
chr3 (126-199)||(51929277-51929350)
chr3 (162-206)||(20210841-20210885)
chr3 (161-204)||(2080998-2081041)
chr3 (153-200)||(20170633-20170680)
chr3 (157-200)||(24684741-24684784)
chr3 (157-204)||(32582845-32582892)
chr3 (170-201)||(46407863-46407894)
chr3 (153-200)||(46478771-46478818)
chr3 (172-206)||(2100092-2100126)
chr3 (10-76)||(5331252-5331318)
chr3 (150-200)||(9832674-9832724)
chr3 (161-203)||(21872211-21872253)
chr3 (10-76)||(29520524-29520590)
chr3 (160-198)||(46407617-46407655)
chr3 (155-188)||(5448550-5448583)
chr3 (18-99)||(30443860-30443941)
chr3 (14-99)||(35959478-35959563)
chr3 (153-206)||(39980833-39980886)
chr3 (128-200)||(47132397-47132467)
chr3 (171-200)||(51929863-51929892)
chr3 (171-199)||(20669471-20669499)
chr3 (154-198)||(21367772-21367816)
chr3 (156-200)||(34235012-34235056)
chr3 (124-200)||(42747701-42747777)
chr3 (163-207)||(45432865-45432909)
chr3 (124-188)||(46778122-46778186)
[»] chr1 (43 HSPs)
chr1 (124-200)||(50644174-50644250)
chr1 (14-79)||(14576695-14576760)
chr1 (134-199)||(24334280-24334345)
chr1 (150-199)||(39976130-39976179)
chr1 (138-194)||(38116002-38116058)
chr1 (161-200)||(6292604-6292643)
chr1 (153-200)||(33204313-33204360)
chr1 (126-200)||(2295173-2295247)
chr1 (138-200)||(2295280-2295342)
chr1 (138-200)||(14385712-14385774)
chr1 (153-198)||(1432619-1432664)
chr1 (127-200)||(36872806-36872879)
chr1 (159-200)||(41505784-41505825)
chr1 (124-200)||(3233934-3234010)
chr1 (10-196)||(13809957-13810145)
chr1 (162-201)||(7217992-7218031)
chr1 (153-200)||(27146174-27146221)
chr1 (126-201)||(37617383-37617458)
chr1 (170-200)||(3319865-3319895)
chr1 (164-206)||(5151990-5152032)
chr1 (153-187)||(7028406-7028440)
chr1 (154-200)||(7069384-7069430)
chr1 (155-197)||(15784423-15784465)
chr1 (10-79)||(28043589-28043659)
chr1 (172-201)||(5886910-5886939)
chr1 (138-183)||(7107448-7107493)
chr1 (10-71)||(33186225-33186286)
chr1 (161-198)||(34303178-34303215)
chr1 (171-208)||(34952324-34952361)
chr1 (161-198)||(51929383-51929420)
chr1 (128-200)||(473242-473314)
chr1 (172-204)||(601163-601195)
chr1 (176-208)||(3887543-3887575)
chr1 (162-198)||(5157185-5157221)
chr1 (153-193)||(6102257-6102297)
chr1 (10-42)||(9572187-9572219)
chr1 (161-197)||(10199330-10199366)
chr1 (164-200)||(24460320-24460356)
chr1 (11-75)||(26678863-26678927)
chr1 (170-206)||(26866434-26866470)
chr1 (162-198)||(29793619-29793655)
chr1 (19-79)||(37517236-37517296)
chr1 (173-209)||(48748505-48748541)
[»] scaffold0024 (2 HSPs)
scaffold0024 (170-204)||(21213-21247)
scaffold0024 (171-208)||(58995-59032)
[»] scaffold0459 (1 HSPs)
scaffold0459 (174-207)||(6671-6704)
[»] scaffold0366 (1 HSPs)
scaffold0366 (174-207)||(6669-6702)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 33266595 - 33266308
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnnctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  33266595 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgaaaaaaactt 33266496  T
Q  110 ttgcgaattgtcatgttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266495 ttgcgaattgtcatgttgttttcgtaaattctcccaaatagtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 33266396  T
Q  210 attgaaactccatggtcattatacctgtaattttttcaacttcttcaagttcaatacgaataaatgtgactccaacttgcccaaatta 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266395 attgaaactccatggtcattatacctgtaattttttcaacttcttcaagttcaatacgaataaatgtgactccaacttgcccaaatta 33266308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 19302556 - 19302482
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| |||||||||| ||||  | |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  19302556 tgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 9210902 - 9210970
Alignment:
Q  130 ttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||| |||  || ||| ||||||||| || |||||||||||||||||||||||||||||    
T  9210902 ttcgtaaattctcccaaacagtctcagaaaacttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 11619153 - 11619070
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctt 207  Q
    ||||||||| |||||||||| ||   ||||||  || |||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  11619153 gttgttttcataaattctcccaatctgtttcatgaagcttatgtcagtagataagctcaaataagccaatccaaacaaaccctt 11619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 4970787 - 4970711
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| |||||| |||  || |||||| |||||||||   |||||||||||||||||||||||||||||    
T  4970787 gttgttttcataagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaaca 4970711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 44822062 - 44822109
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||    
T  44822062 tcacaaaacttatgtcagcagataaactcaaataagtcaatccaaaca 44822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 119877 - 119938
Alignment:
Q  18 gataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 79  Q
    |||||||||||||||||||| || | || || ||||||||| |||||||||| |||||||||    
T  119877 gataaaataaagttaaattgtttgtgtaaatgctataagttgtttttataagttacattaga 119938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 37064428 - 37064379
Alignment:
Q  159 aacttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||| || ||||||||| ||||||||||||||||||||| |||||||    
T  37064428 aacttatatcagtagataagatcaaataagtcaatccaaacagaccctta 37064379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 18962578 - 18962502
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||| |||| ||| ||||||||||  || | |||||||||||||| ||||||||| || ||||| ||||||||||||    
T  18962578 gttggtttcataagttctccaaaacagtctaacaaaacttatgtcagtagataagatcgaataactcaatccaaaca 18962502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 40371601 - 40371565
Alignment:
Q  172 agataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||||||||||||||||||||||| ||||||    
T  40371601 agataagctcaaataagtcaatccaaacatgccctta 40371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 45806588 - 45806524
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctaca 74  Q
    ||||||| || ||||||| ||||||||| |||||||  | ||||||||| |||||||||||||||    
T  45806588 tagcaaaagagaaaataacgttaaattgtttttctaattgctataagttgtttttataagctaca 45806524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 1418531 - 1418570
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  1418531 cttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 11783009 - 11782954
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||| |||||||  || |||||||| |||||||||||||||||||||| |||||||    
T  11783009 tcactaaacttacatcagtagataatctcaaataagtcaatccaaacaaaccctta 11782954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 22283612 - 22283565
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||| ||||| | ||||||||| |||||||||||||||||||||    
T  22283612 tcacaaaatttatgacagtagataagttcaaataagtcaatccaaaca 22283565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 33673183 - 33673226
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||    
T  33673183 acaaagcttatgtcagtagataagctcaaatgagtcaatccaaa 33673226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 34036021 - 34036068
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| || |||||| |||||||||||||||||||||||| ||||||    
T  34036021 tcacaatacatatgtcagtagataagctcaaataagtcaattcaaaca 34036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 44917483 - 44917444
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  44917483 ttatgtcgggagataaactcaaataagtcaatccaaacat 44917444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 47046065 - 47046022
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacataccc 205  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||    
T  47046065 ttatgtcagtagataagcacaaataagtcaatccaaacagaccc 47046022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 529483 - 529521
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||||||||||||||||||||| || |||||||    
T  529483 gtagataagctcaaataagtcaatccaatcagaccctta 529521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 28341024 - 28340990
Alignment:
Q  172 agataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||||||||||||||||||||| |||||    
T  28341024 agataagctcaaataagtcaatccaaacagaccct 28340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 40598434 - 40598404
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||||||||||||||||||    
T  40598434 gtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 46407310 - 46407384
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||| |||||| || | ||||| ||||||||||| | |||||||||||||| |||| |||||| ||||    
T  46407310 tgttttcataagttctcccaagtagtttcccaaaacttatggcagtagataagctcaattaagccaatcctaaca 46407384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 18765388 - 18765433
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||||||||||||  |||||||||||||||||  |||||||||    
T  18765388 tcacaaaacttatgtcaatagataagctcaaataaagcaatccaaa 18765433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 25596152 - 25596192
Alignment:
Q  169 ggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  25596152 ggtagataagctcaaataagtcagtccaaacaggcccttag 25596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 33678855 - 33678927
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatcca 196  Q
    ||||||||| ||| |||||| |||| || ||||||||||||||   ||||||||| | ||||||| |||||||    
T  33678855 gttgttttcataagttctcccaaattgtctcacaaaacttatgcaagtagataagtttaaataagccaatcca 33678927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 34083557 - 34083521
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  34083557 gtagatgagctcaaataagtcaatccaaacatgccct 34083521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 27043799 - 27043741
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  27043799 gtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacagaccctta 27043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 15173294 - 15173223
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||| |||| ||||| |||  || |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  15173294 ttttcataaagtctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 17822846 - 17822784
Alignment:
Q  138 ttctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| |||| || ||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  17822846 ttctcctaaatagtctcacagaacttatgtcagtagataagctcaaataagttaatccaaaca 17822784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 42403988 - 42403942
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||    
T  42403988 cacaaaacttatgtcagttgataagctcaaataagtcaatccaaaca 42403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 41336864 - 41336911
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||    
T  41336864 tcacaaaacttatgtgagtagataaactcaaataagtcaatccaaaca 41336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 54426147 - 54426194
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||||    
T  54426147 tcacaaaacttatgccagtagataagctcaaataagccaatccaaaca 54426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 22539071 - 22538998
Alignment:
Q  125 ttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaa-taagtcaatccaaa 198  Q
    |||||||||||| |||||| |||| || ||||||| |||||| | ||||||||||||||| ||||||||||||||    
T  22539071 ttgttttcgtaagttctcccaaattgtctcacaaa-cttatgccagtagataagctcaaagtaagtcaatccaaa 22538998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 52315163 - 52315118
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||    
T  52315163 tcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 55437178 - 55437227
Alignment:
Q  151 tttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| | |||||||| |||||||||| |||||||||||    
T  55437178 tttcacaaaacttatggcagtagataaactcaaataagccaatccaaaca 55437227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 35571596 - 35571544
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||||||||   ||||||||||||||||||| ||||||||||| |||||    
T  35571596 cacaaaacttatgctagtagataagctcaaataagccaatccaaacagaccct 35571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 49003844 - 49003800
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatc 194  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||    
T  49003844 gtttcacaaaacttacgtcagtggataagctcaaataagtcaatc 49003800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 679837 - 679872
Alignment:
Q  172 agataagctcaaataagtcaatccaaacataccctt 207  Q
    |||||||||||||| |||||||||||||||||||||    
T  679837 agataagctcaaattagtcaatccaaacataccctt 679872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 1133044 - 1133087
Alignment:
Q  165 tgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||| |||||||||||||||||||||||| |||||| |||||||    
T  1133044 tgtcagtagataagctcaaataagtcaattcaaacacaccctta 1133087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 3639126 - 3639079
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||||||||||||||||||  |||||||| || ||||||    
T  3639126 cttatgtcggtagataagctcaaataagcaaatccaaatatgccctta 3639079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 8705045 - 8705092
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||  ||||||||||||||| || |||||||||||    
T  8705045 tcacaaaacttatgtcaatagataagctcaaatgagccaatccaaaca 8705092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 200
Target Start/End: Complemental strand, 17975287 - 17975256
Alignment:
Q  169 ggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||||||||||||||||||    
T  17975287 ggtagataagctcaaataagtcaatccaaaca 17975256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 21731622 - 21731575
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||||||    
T  21731622 tcacaaaacttatgtcagtagatatgctcaaataaaccaatccaaaca 21731575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 21953395 - 21953430
Alignment:
Q  171 tagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||||||||||||||||||||||||| |||||    
T  21953395 tagataagctcaaataagtcaatccaaacagaccct 21953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 25717705 - 25717744
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  25717705 cttatgtcggtacataagctcaaataagacaatccaaaca 25717744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 29126221 - 29126182
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  29126221 cttatgccggtagataagctcaaataagccaatccaaaca 29126182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 29657488 - 29657527
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaa 192  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  29657488 tcacaaaacttgtgttggtagataagctcaaataagtcaa 29657527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 32769495 - 32769530
Alignment:
Q  165 tgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| |||||||||||||||||||    
T  32769495 tgtcggtagataagctaaaataagtcaatccaaaca 32769530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 39691115 - 39691068
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||   |||||||||||||||||||||||| ||||||    
T  39691115 tcacaaaacttatgctagtagataagctcaaataagtcaattcaaaca 39691068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 44797984 - 44798031
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| ||||||||||| |||| || |||||||||||    
T  44797984 tcacaaaacttatgtcagtagataagcttaaatcagccaatccaaaca 44798031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 49940133 - 49940086
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||  | || ||||||||||||||||||||||||||    
T  49940133 tcacaaaacttatgttagcaggtaagctcaaataagtcaatccaaaca 49940086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 825446 - 825408
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  825446 ttatgtaggtatataagctcaaataagtcaatccaaaca 825408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 2244137 - 2244207
Alignment:
Q  135 aaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccc 205  Q
    ||||||||| |||  |||||| |||||||||||| |||||||| |||  |||| |||||||||||| ||||    
T  2244137 aaattctcccaaacagtttcaaaaaacttatgtcagtagataaactcggataaatcaatccaaacagaccc 2244207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 3891712 - 3891745
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacatac 203  Q
    |||||||| |||||||||||||||||||||||||    
T  3891712 gtagataaactcaaataagtcaatccaaacatac 3891745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 7601718 - 7601787
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 79  Q
    |||||||||||||||||||||||||||| |||| || ||  ||| |||  ||||||||| ||| ||||||    
T  7601718 tagcaaaggataaaataaagttaaattgtttttgtatatgttatgagtagtttttataaactatattaga 7601787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 19039599 - 19039566
Alignment:
Q  173 gataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||||||| ||||||||||||||||||    
T  19039599 gataagctcaaataactcaatccaaacataccct 19039566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 25571369 - 25571410
Alignment:
Q  159 aacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||| |||||||| |||||||||| |||||||||||    
T  25571369 aacttatgtcagtagataaactcaaataagccaatccaaaca 25571410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 29388720 - 29388765
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||  ||||||||| ||||||||||||| |||||||    
T  29388720 acaaaacttatgttagtagataaggtcaaataagtcaacccaaaca 29388765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 53294078 - 53294033
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||| ||||| |||||||||| ||||| ||||||||||||||    
T  53294078 acaaaactcatgtcagtagataagcacaaattagtcaatccaaaca 53294033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 53315450 - 53315483
Alignment:
Q  173 gataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||||||||||||||||||||||| |||||    
T  53315450 gataagctcaaataagtcaatccaaacagaccct 53315483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 54575561 - 54575516
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||    
T  54575561 cttatgtctataaataaactcaaataagtcaatccaaacataccct 54575516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 1408061 - 1408105
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    ||||||||||| |||  ||||||||||||||||||| ||||||||    
T  1408061 tcacaaaacttgtgtatgtagataagctcaaataagccaatccaa 1408105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 7368003 - 7367967
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||| |||||||||||||||||||||| |||||    
T  7368003 gtagataaactcaaataagtcaatccaaacagaccct 7367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 13126542 - 13126490
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccc 205  Q
    |||||||||||||||  |||| |||||| ||||||| ||||||||||| ||||    
T  13126542 tcacaaaacttatgttagtaggtaagctaaaataagccaatccaaacagaccc 13126490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 18815127 - 18815183
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    ||||||||||||||   |||| |||||||||||||| |||||||||||  |||||||    
T  18815127 tcacaaaacttatgctagtaggtaagctcaaataagccaatccaaacaggcccttag 18815183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 24169367 - 24169423
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||||||||| | |||||||| ||| |||||| |||||||||||  |||||||    
T  24169367 tcacaaaacttatgccagtagataaactctaataagccaatccaaacaagcccttag 24169423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 24193655 - 24193683
Alignment:
Q  172 agataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||||||||||||||||    
T  24193655 agataagctcaaataagtcaatccaaaca 24193683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 25309313 - 25309349
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  25309313 gtagataagttcaaataagtcaatccaaacagaccct 25309349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 42404109 - 42404049
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagc 70  Q
    ||||||| |||||||||| ||||||||| |||| ||||| || |||| | |||||||||||    
T  42404109 tagcaaaagataaaataatgttaaattgtttttgtacatgctgtaagctgtttttataagc 42404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 55414404 - 55414332
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||| |||||||||| |||  |  |||||||| ||||| | |||||||  ||||||||||||||||||||||    
T  55414404 ttttcataaattctcctaaacagcatcacaaaaattatgccagtagatactctcaaataagtcaatccaaaca 55414332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 39594913 - 39594958
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39594913 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 12857398 - 12857257
Alignment:
Q  61 ttttataagctacattagaaaaattacaaaaataagctgnnnnnnncttttgcgaattgtcat--gttgttttcgtaaattctccaaaatggtttcacaa 158  Q
    |||||||||||| ||| || || ||||||||||||||||       ||| ||  |||||||||  ||||||||| ||| ||||||  ||  |||||||||    
T  12857398 ttttataagctatattggagaacttacaaaaataagctgaaaaaagcttgtgaaaattgtcataagttgttttcataagttctccggaaaagtttcacaa 12857299  T
Q  159 aacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| |||  |||||||||||||||||  |||||||||||    
T  12857298 aacttacgtcaatagataagctcaaataaaccaatccaaaca 12857257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 14331478 - 14331527
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacatacccttaga 210  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  14331478 cttatgacagtagataagctcaaataagtcaatccaaacagacccttaga 14331527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 34736493 - 34736440
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  34736493 tcacaaaacttatgtcaccagataagctcaaataagtcaatccaaacatgccct 34736440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 32941546 - 32941626
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataa-gctcaaataagtcaatccaaacataccc 205  Q
    ||||||| ||| |||||| ||| ||| ||||| |||||||||| |||||||| |||| |||||||||||||||||| ||||    
T  32941546 tgttttcataagttctcccaaacggtctcacagaacttatgtcagtagataaagctctaataagtcaatccaaacagaccc 32941626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 35299866 - 35299926
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttaga 210  Q
    ||||| ||||||| |||||  ||||||||||||||||||||||||||||||  ||||||||    
T  35299866 gtttctcaaaactcatgtcaatagataagctcaaataagtcaatccaaacaggcccttaga 35299926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 41419423 - 41419479
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||||| || |||||    
T  41419423 tcacaaaatttatgtcagtagattagctcaaataagtcaatccaaacaaacacttag 41419479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 41534542 - 41534598
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||||| || |||||    
T  41534542 tcacaaaatttatgtcagtagattagctcaaataagtcaatccaaacaaacacttag 41534598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 14932417 - 14932456
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  14932417 gtagataagctcaaataagtcaatccaaacatactcttag 14932456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 9107194 - 9107240
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||    
T  9107194 tcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 7674751 - 7674796
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||| || |||||||||||||||||||| |||||||||    
T  7674751 tcacaaaacttaagtaggtagataagctcaaataagccaatccaaa 7674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 7705964 - 7705907
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttaga 210  Q
    ||||||||||||||   ||||||| |||||||||||||||||||||||  ||||||||    
T  7705964 tcacaaaacttatgctagtagatatgctcaaataagtcaatccaaacaggcccttaga 7705907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 9174938 - 9174975
Alignment:
Q  171 tagataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9174938 tagataagctcaaataagtcaatccaaacatgccctta 9174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 11064770 - 11064814
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||    
T  11064770 tcacaaaacttatgttggtagataaactcaaataaatcaatccaa 11064814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 16937986 - 16937802
Alignment:
Q  18 gataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnncttttgcgaat 117  Q
    |||||||||| ||||||||| |||| || || ||||||||| |||||||| |||| ||| || || |||  |||||||||||       ||| ||  | |    
T  16937986 gataaaataacgttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctgaaaaaagcttatgaaatt 16937887  T
Q  118 tgtcat--gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||  | ||||||| ||| |||| | |||   | ||||||||||||||   ||||||||||||||||||| |||||||||||    
T  16937886 tgtcataagctgttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatccaaaca 16937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 22209786 - 22209746
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  22209786 aaaacttatgccagtagataagctcaaataagtcaatccaa 22209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 499689 - 499650
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  499689 cttatgtcagtaggtaagctcaaataagtcaatccaaaca 499650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 3932642 - 3932595
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||||||| | ||||||||||||||| ||||||||||||||    
T  3932642 tcacaaagcttatgttgttagataagctcaaattagtcaatccaaaca 3932595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 10640057 - 10640104
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  10640057 tcacaaaacttatgtcagtagataaactcaaataagctaatccaaaca 10640104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 12425677 - 12425716
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaa 192  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  12425677 tcacaaaacttatgacagtagataagctcaaataagtcaa 12425716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 17369316 - 17369354
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  17369316 ttatgtcagtagataagttcaaataagtcaatccaaaca 17369354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 32010054 - 32010096
Alignment:
Q  158 aaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||  |||||||| ||||||||||||||||||||||    
T  32010054 aaacttatgtgagtagataaactcaaataagtcaatccaaaca 32010096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 36796664 - 36796626
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  36796664 ttatgtcattagataagctcaaataagtcaatccaaaca 36796626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 42646791 - 42646829
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  42646791 gtagataagctcaagtaagtcaatccaaacagaccctta 42646829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 4625835 - 4625872
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaa 192  Q
    ||||||||||| || |||||||||||||||||||||||    
T  4625835 acaaaacttatttccgtagataagctcaaataagtcaa 4625872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 6096651 - 6096696
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||| | ||||||||| ||||||| |||||||||||    
T  6096651 tcacaaaacttatgccagtagataagttcaaatacgtcaatccaaa 6096696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 9202712 - 9202671
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatcca 196  Q
    |||||||||||| | | |||||||||||||||||||||||||    
T  9202712 acaaaacttatgccaggagataagctcaaataagtcaatcca 9202671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 32942700 - 32942745
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||| ||||| ||||||  |||||||||||||||||    
T  32942700 acaaaacttatgtcagtagaaaagctcgtataagtcaatccaaaca 32942745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 42582679 - 42582606
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||| ||| ||||||||||  |  ||||||||||||| ||  ||||||  |||||||||||||||||||||||    
T  42582679 ttttcttaagttctccaaaacagcctcacaaaacttatatcattagataccctcaaataagtcaatccaaacat 42582606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 8651299 - 8651263
Alignment:
Q  172 agataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  8651299 agataagctcaaataaggcaatccaaacatgccctta 8651263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 11700266 - 11700314
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    |||||||||||||| | || ||||||||||||||||  |||||||||||    
T  11700266 tcacaaaacttatgccagtggataagctcaaataagcaaatccaaacat 11700314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 12857700 - 12857624
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| ||||||  ||  ||||||||||||||| |||  ||||| |||||||||||  |||||||||||    
T  12857700 gttgttttcataagttctccggaacagtttcacaaaacttacgtcaatagatgagctcaaataaaccaatccaaaca 12857624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 14257569 - 14257601
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacata 202  Q
    ||||||||| |||||||||||||||||||||||    
T  14257569 gtagataagttcaaataagtcaatccaaacata 14257601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 14706241 - 14706205
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  14706241 ttatgtcagtaggtaagctcaaataagtcaatccaaa 14706205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 15015922 - 15015982
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataag 188  Q
    ||||| ||| |||||| |||  || ||||||| |||||||| |||||||||||||||||||    
T  15015922 ttttcataagttctcccaaacagtctcacaaagcttatgtcagtagataagctcaaataag 15015982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 32197844 - 32197884
Alignment:
Q  160 acttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| |||||||| |||||| |||||||||||||||    
T  32197844 acttatgtcagtagataaactcaaaaaagtcaatccaaaca 32197884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 35963351 - 35963379
Alignment:
Q  171 tagataagctcaaataagtcaatccaaac 199  Q
    |||||||||||||||||||||||||||||    
T  35963351 tagataagctcaaataagtcaatccaaac 35963379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 41535456 - 41535532
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| |||||| |||  ||||||||||||| || |  ||||||||||| ||||||| |||||| ||||    
T  41535456 gttgttttcataagttctcccaaactgtttcacaaaactgatataagtagataagcttaaataagccaatccgaaca 41535532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 42647005 - 42647041
Alignment:
Q  164 atgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  42647005 atgtcagtagataagctcaaataagccaatccaaaca 42647041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 27317454 - 27317530
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| |||||  |||  || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27317454 gttgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaaca 27317530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 4607000 - 4607076
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||  || |||||| |||| || ||||||||||||| | |||||||||||||||||||| |||||||||||    
T  4607000 gttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 18179024 - 18179100
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||| |||||   |  ||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  18179024 gttgttttcgtaagttctcttgagcggtctcacaaaacttatgttagtagataagctcaaataagtcaatccaaaca 18179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 30331830 - 30331902
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||| ||| |||||| |||  || |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  30331830 ttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 15305775 - 15305825
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  15305775 gtttcacaaaacttatgtcaatagataagctcaaataagccaatccaaaca 15305825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 2416414 - 2416470
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||||||||||  |||||||| |||||||||||||||| |||||| ||||    
T  2416414 gtttcacaaaacttatgttagtagataaactcaaataagtcaatctaaacatgccct 2416470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 3312181 - 3312237
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||  |||||||    
T  3312181 tcacaaaacttacgtcagtagataagctcaaataagccaatccaaacaagcccttag 3312237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 42419870 - 42419942
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||||||| |||||| |||  || ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  42419870 tgttttcgtaagttctcccaaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 31744406 - 31744449
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  31744406 aaaacttatgtcggtagataagcccaaataagccaatccaaaca 31744449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 39073668 - 39073613
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||    
T  39073668 tcacaaaaattatgtcggtagatgaactcaaataaatcaatctaaacataccctta 39073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 22878210 - 22878251
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacata 202  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  22878210 cttatgtcagtggataagctcaaataagtcaatccaaacata 22878251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 28803488 - 28803451
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28803488 cttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 6772482 - 6772446
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6772482 gtagataagctcaaataagtcaatccaaacatgccct 6772446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 7928264 - 7928208
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    ||||| ||||||||||  |||||||||||||||||| |||||||||||  |||||||    
T  7928264 tcacacaacttatgtcaatagataagctcaaataagccaatccaaacaggcccttag 7928208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 18525198 - 18525158
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacata 202  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  18525198 ttatgtctgtagataagctcaaataagtcaattcaaacata 18525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 23974486 - 23974406
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||| ||| ||||||||||   | |||| || || ||||| |||||||| | ||||||||||||||||||||||||||    
T  23974486 tgttttcataagttctccaaaacaatctcactaatctcatgtcagtagataaacccaaataagtcaatccaaacataccct 23974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 200
Target Start/End: Complemental strand, 3078558 - 3078527
Alignment:
Q  169 ggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||||||||||||||||||    
T  3078558 ggtagataagctcaaataagtcaatccaaaca 3078527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 10619186 - 10619139
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||||||    
T  10619186 tcacaaaacttgtgtcagtagataaactcaaatgagtcaatccaaaca 10619139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 15370281 - 15370242
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  15370281 cttatgccagtagataagctcaaataagtcaatccaaaca 15370242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 20952432 - 20952507
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||||| ||| |||||  |||| || | ||||||||| || | ||| ||||||||||||||||||||||||||||    
T  20952432 tgttttcataagttctcttaaatagtctaacaaaacttttgccagtatataagctcaaataagtcaatccaaacat 20952507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 26202132 - 26202179
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||||    
T  26202132 tcacaaaacttatgtcagcagataagttcaaataagttaatccaaaca 26202179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 31561711 - 31561664
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    |||| |||||||||||||  |||||||| |||||||||||||||||||    
T  31561711 gttttacaaaacttatgttagtagataatctcaaataagtcaatccaa 31561664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 44119866 - 44119933
Alignment:
Q  133 gtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||  |||  ||||||||||||||||||| | |  |||||||||||||| |||||||||||    
T  44119866 gtaaattctctcaaacagtttcacaaaacttatgtcagcatgtaagctcaaataagccaatccaaaca 44119933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 26548564 - 26548598
Alignment:
Q  160 acttatgtcggtagataagctcaaataagtcaatc 194  Q
    ||||||||||||||||||||||||||||| |||||    
T  26548564 acttatgtcggtagataagctcaaataagccaatc 26548598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 35329767 - 35329729
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  35329767 gtagataagctcacataagtcaatccaaacacaccctta 35329729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 40837394 - 40837356
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  40837394 ttatgtcagtagataagctcaaataagccaatccaaaca 40837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 41407042 - 41407096
Alignment:
Q  18 gataaaataaagttaaattgcttttctacatcctataagttctttttataagcta 72  Q
    ||||||||||||||||| ||||||| || || ||||||||| |||| ||||||||    
T  41407042 gataaaataaagttaaactgcttttgtatattctataagttgttttcataagcta 41407096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 750856 - 750885
Alignment:
Q  171 tagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||||||||||||||||    
T  750856 tagataagctcaaataagtcaatccaaaca 750885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 4350802 - 4350847
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||| ||||| ||||||||||||| ||||||||||| |||||    
T  4350802 cttatgtcagtagagaagctcaaataagccaatccaaacaaaccct 4350847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 26143635 - 26143561
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||| |||||| |||  || |||  ||| ||||||| ||||||||||||||| ||| |||||||||||    
T  26143635 gttgttttcgtaagttctcccaaacagtctca--aaatttatgtcagtagataagctcaaacaagccaatccaaaca 26143561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 35809979 - 35810012
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatc 194  Q
    |||||| |||||||||||||||||||||||||||    
T  35809979 cttatgccggtagataagctcaaataagtcaatc 35810012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 40059418 - 40059381
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  40059418 ttatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 40085318 - 40085281
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  40085318 ttatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 44590128 - 44590173
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||||||||||||  ||||||| |||||||||| |||||||||    
T  44590128 tcacaaaacttatgtctatagataaactcaaataagccaatccaaa 44590173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 2964766 - 2964722
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||| ||||||||||| |||||||||| ||||||||||| ||||    
T  2964766 ttatgccggtagataagttcaaataagttaatccaaacatgccct 2964722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 13866999 - 13867031
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacata 202  Q
    ||||||||||||||||| |||||||||||||||    
T  13866999 gtagataagctcaaataggtcaatccaaacata 13867031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 38602431 - 38602478
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  38602431 tcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 30251447 - 30251373
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||| |||||| |||  || |||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  30251447 tgttttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaaca 30251373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 10758367 - 10758167
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnnctt 109  Q
    |||||||  ||||||||||||||||||| |||| || || ||||||||| | ||||||||||| ||||| ||  |||  |||| ||||||       |||    
T  10758367 tagcaaatcataaaataaagttaaattgtttttgtatatgctataagttgtctttataagctatattagcaac-ttatgaaaacaagctgaaaaaagctt 10758269  T
Q  110 ttgcgaattgtcat--gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctt 207  Q
    |||  |||||||||  | ||||||| ||||||||   |||  || |||||||||||||||  | ||||||| |||||||||||||| ||||||| |||||    
T  10758268 ttgaaaattgtcataagctgttttcataaattctatcaaacagtctcacaaaacttatgttagcagataagttcaaataagtcaattcaaacatgccctt 10758169  T
Q  208 ag 209  Q
    ||    
T  10758168 ag 10758167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 43717927 - 43717855
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||| ||| |||||| |||| || ||||||||||||||||  |||||||||||||||||| |||||||||    
T  43717927 tgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaa 43717855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 36963347 - 36963268
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccc 205  Q
    |||||| |||| |||||| |||  || |||||||||||||| | |||||| |||||||||||| ||||||||||| ||||    
T  36963347 tgtttttgtaagttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaacagaccc 36963268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 1096594 - 1096642
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  1096594 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacat 1096642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 5088243 - 5088279
Alignment:
Q  172 agataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||| |||||||||||||||||||||||||||    
T  5088243 agataagctgaaataagtcaatccaaacataccctta 5088279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 29818927 - 29818855
Alignment:
Q  136 aattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||| |||  || ||||||||||||||   ||||||||||||||||| | |||||||||||| ||||||    
T  29818927 aattctccgaaacagtctcacaaaacttatgatagtagataagctcaaatatgccaatccaaacatgccctta 29818855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 2487966 - 2487915
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacatacccttagatt 212  Q
    |||||||| |||||| | |||||||||| |||||||||||| ||||||||||    
T  2487966 cttatgtcagtagatgaactcaaataagccaatccaaacatgcccttagatt 2487915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 9130285 - 9130238
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||| | |||||||||||||||||||  ||||||||||    
T  9130285 tcacaaaacttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 32213223 - 32213270
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||| || ||| ||||||||||||||| |||||||||||    
T  32213223 tcacaaaacttatatcagtatataagctcaaataagacaatccaaaca 32213270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 35534579 - 35534532
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||  |||||||||||||||||||||| || |||||    
T  35534579 tcacaaaacttatgttagtagataagctcaaataagtcattctaaaca 35534532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 39551205 - 39551130
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaa-cttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||| | |||||||||| |||  ||||||||||  ||||| || |||||||| ||||||||||||||||||||    
T  39551205 gttgtttccataaattctcccaaacagtttcacaaatgcttatatccgtagataatctcaaataagtcaatccaaa 39551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 2606162 - 2606200
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  2606162 ttatgtcagtagataagctcgaataagtcaatccaaaca 2606200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 4560614 - 4560652
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  4560614 cttatgtcaatagataagctcaaataagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 15180617 - 15180690
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||  ||||||||||||| | | ||| |||||||||| | |||||||| |||||||||| |||||||||||    
T  15180617 tgttttcagaaattctccaaaaag-tctcataaaacttatggcagtagataaactcaaataagccaatccaaaca 15180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 29417568 - 29417522
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||| |||||||| ||||||| |||| ||||||||||||||    
T  29417568 ttatgtcggtcgataagctaaaataagccaattcaaacataccctta 29417522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 35374413 - 35374371
Alignment:
Q  158 aaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||    
T  35374413 aaacttgtgtgggtagataagctcaaataactcaatccaaaca 35374371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 40859749 - 40859703
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||||    
T  40859749 tcacaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 42893455 - 42893409
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||||| |||||||||| ||||||||||| ||||||||||    
T  42893455 cacaaaaattatgccggtagataaactcaaataagttaatccaaaca 42893409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 12497038 - 12496993
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||| | | |||||||||||||||| ||||||||||    
T  12497038 tcacaaaacttatgccaggagataagctcaaataaatcaatccaaa 12496993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 23996586 - 23996557
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtca 191  Q
    ||||||||||||||||||||||||||||||    
T  23996586 ttatgtcggtagataagctcaaataagtca 23996557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 1058043 - 1057987
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||||||||||  ||||||||||||||||||| || | ||||| | |||||||    
T  1058043 tcacaaaacttatgtaagtagataagctcaaataagccagttcaaacttgcccttag 1057987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 10727465 - 10727505
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacatacccttaga 210  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  10727465 gtagataaactcaaataagtcaatccaaacagacccataga 10727505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 35928688 - 35928640
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacatacccttag 209  Q
    |||||||| ||||||||||| ||||||| ||||||||||| || |||||    
T  35928688 cttatgtcagtagataagctaaaataagacaatccaaacagactcttag 35928640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 41589661 - 41589737
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| ||||||||||  || ||| ||| |||||||| ||||| ||||||||||||  ||||| |||||    
T  41589661 gttgttttcataagttctccaaaacagtctcaaaaagcttatgtcagtagacaagctcaaataaaccaatctaaaca 41589737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 21405120 - 21405067
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  21405120 tcacaaaacttatgtcagtatataagctcaaataagtcaatccaaacagaccct 21405067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 10645380 - 10645298
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||| ||| |||||| |||  || | ||||||||||||||  ||||||| ||||||| || |||||||||||||||||    
T  10645380 gttgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaacataccct 10645298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 35069576 - 35069531
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||    
T  35069576 acaaaacttatgtcagtagataagctcaaataagccaatacaaaca 35069531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 4163261 - 4163305
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||    
T  4163261 aaaacttatgccagtagataagctcaaataagccaatccaaacat 4163305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 4224882 - 4224926
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||    
T  4224882 aaaacttatgccagtagataagctcaaataagccaatccaaacat 4224926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 31776221 - 31776189
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacata 202  Q
    |||||||||||||||||||||||||||||||||    
T  31776221 gtagataagctcaaataagtcaatccaaacata 31776189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 33027706 - 33027750
Alignment:
Q  163 tatgtcggtagataagctcaaataagtcaatccaaacataccctt 207  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||    
T  33027706 tatgtcagtagataagctcaaataaatcaatccaaacatgccctt 33027750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 33089582 - 33089658
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaa-acttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||||| ||| |||||  |||| || ||||||| || |||||| ||||||||||||||||||||||| ||||||||    
T  33089582 tgttttcataagttctctgaaatagtctcacaaatacatatgtcagtagataagctcaaataagtcaacccaaacat 33089658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 2455334 - 2455397
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataa 187  Q
    ||||||||| ||| |||||  |||| ||||||| ||||||||||  ||||||||||||||||||    
T  2455334 gttgttttcataagttctctcaaatagtttcaccaaacttatgtttgtagataagctcaaataa 2455397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 2457053 - 2457092
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  2457053 cttatgtcggtagataatctcaaataagccaatccaaaca 2457092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 6536716 - 6536771
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||||||||| |||| ||| ||||||||| | ||||||||||| ||||||    
T  6536716 tcacaaaacttatgtcagtaggtaaactcaaataatttaatccaaacatgccctta 6536771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 18612411 - 18612462
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccc 205  Q
    |||||||||||||||||| || ||||||||| |||| |||||||||| ||||    
T  18612411 cacaaaacttatgtcggttgaaaagctcaaaaaagttaatccaaacaaaccc 18612462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 835226 - 835180
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||   ||||||||||||||||||| |||||||||||    
T  835226 cacaaaacttatgctagtagataagctcaaataaggcaatccaaaca 835180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 9202934 - 9202904
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||||||||||||||||||    
T  9202934 gtagataagctcaaataagtcaatccaaaca 9202904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 18076155 - 18076217
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagcta 72  Q
    ||||||| || ||||||| ||||||||| |||||||  | ||||||||| |||||||||||||    
T  18076155 tagcaaaagagaaaataaggttaaattgtttttctaattgctataagttgtttttataagcta 18076217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 24626258 - 24626316
Alignment:
Q  14 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagcta 72  Q
    ||||||||||| |||||||||||| |||| || || ||||||||| |||| ||||||||    
T  24626258 aaaggataaaacaaagttaaattgtttttgtatattctataagttgttttcataagcta 24626316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 24982794 - 24982856
Alignment:
Q  138 ttctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||  || |||||||||||||||  ||||||||| || ||| ||||||||||||||    
T  24982794 ttctccaaaacagtctcacaaaacttatgttagtagataagatctaattagtcaatccaaaca 24982856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 29249518 - 29249552
Alignment:
Q  174 ataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||||||||||||||||||||| ||||||    
T  29249518 ataagctcaaataagtcaatccaaacatgccctta 29249552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 34404691 - 34404645
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  34404691 cacaaaacttatgtcagttgataaactcaaataagtaaatccaaaca 34404645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 32729109 - 32729060
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacata 202  Q
    |||||||||||| ||  |||||||| |||||||||||||||||| |||||    
T  32729109 tcacaaaacttaagtttgtagataaactcaaataagtcaatccacacata 32729060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 35071598 - 35071643
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||| | ||| ||||||| |||||||||||||||||    
T  35071598 tcacaaaacttatggcagtatataagctgaaataagtcaatccaaa 35071643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 2455922 - 2455954
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaat 193  Q
    |||||| ||||||||||||||||||||||||||    
T  2455922 cttatgccggtagataagctcaaataagtcaat 2455954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 10452369 - 10452333
Alignment:
Q  171 tagataagctcaaataagtcaatccaaacataccctt 207  Q
    |||||||||||||||||| |||||||||||| |||||    
T  10452369 tagataagctcaaataagccaatccaaacatgccctt 10452333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 12111088 - 12111116
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||||||||||||||||||    
T  12111088 gtagataagctcaaataagtcaatccaaa 12111116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 19800408 - 19800376
Alignment:
Q  168 cggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||||||| ||||||||||||    
T  19800408 cggtagataagctcaaataaatcaatccaaaca 19800376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 30536924 - 30536884
Alignment:
Q  160 acttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||  |||||||| ||||||||||||||||||||||    
T  30536924 acttatgtaagtagataaactcaaataagtcaatccaaaca 30536884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 584123 - 584196
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||| ||||||||||||||  || ||||| ||||||||   ||||||||||||||||||||||||||||||    
T  584123 tgttttcataaattctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 24085331 - 24085258
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||| ||| |||||||||   || |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  24085331 tgttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 34610798 - 34610721
Alignment:
Q  127 gttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacatacc 204  Q
    |||||| ||| |||||| |||| |||  |||||||||||||| ||||||||||||||||||||| || ||||||||||    
T  34610798 gttttcataagttctcccaaatagttgtacaaaacttatgtcagtagataagctcaaataagtccatacaaacatacc 34610721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 16073007 - 16072960
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16073007 tcacaaaacttatgtcattagataagctcaaataagtcaatccaaaca 16072960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 25447211 - 25447164
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  25447211 tcacaaaacttatgtcagtagataaactcaaataagtcaatccaaaca 25447164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 36631158 - 36631075
Alignment:
Q  14 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagc 97  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||||| ||||||| ||||| ||| || || |||  |||||||||    
T  36631158 aaaggataaagtaaagttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataagc 36631075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 42799960 - 42799885
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagat-aagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||| |||||| |||  |||||||||||| |||||| |||||| ||||||||||||| |||||||||||    
T  42799960 tgttttcataagttctcccaaagagtttcacaaaacatatgtcagtagataaagctcaaataagccaatccaaaca 42799885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 26990181 - 26990143
Alignment:
Q  163 tatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaacat 26990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 31615515 - 31615473
Alignment:
Q  164 atgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  31615515 atgtccgtagataaactcaaataagtcaatccaaacataccct 31615473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 18405797 - 18405752
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||    
T  18405797 tcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 26911699 - 26911740
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  26911699 aaaacttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 32663754 - 32663795
Alignment:
Q  165 tgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  32663754 tgtcggtagataagctcaaataagccaatccaaacagaccct 32663795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 33405155 - 33405114
Alignment:
Q  156 caaaacttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  33405155 caaaacttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 51929350 - 51929277
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    |||||||  ||||||||  |||| || |||||||||||||| | ||| ||||| ||||||||||||||||||||    
T  51929350 tgttttcagaaattctctcaaatagtatcacaaaacttatgccagtaaataaggtcaaataagtcaatccaaac 51929277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 20210885 - 20210841
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||    
T  20210885 ttatgtcagtagataacctcaaataaatcaatccaaacataccct 20210841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 2081041 - 2080998
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacatacc 204  Q
    ||||||||  |||||||| |||||||||||||||||||||||||    
T  2081041 cttatgtcaatagataagttcaaataagtcaatccaaacatacc 2080998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 20170680 - 20170633
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||| |||||||||||  |||||||||||||||||| |||||||||||    
T  20170680 tcactaaacttatgtcactagataagctcaaataagccaatccaaaca 20170633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 24684784 - 24684741
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||| | |||||||||||||||||||| ||||||||||    
T  24684784 aaaacttatgccagtagataagctcaaataagttaatccaaaca 24684741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 32582845 - 32582892
Alignment:
Q  157 aaaacttatgtcggtagataagctcaaataagtcaatccaaacatacc 204  Q
    ||||||||||   |||||||| ||||||||||||||||||||||||||    
T  32582845 aaaacttatggtagtagataaactcaaataagtcaatccaaacatacc 32582892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 46407863 - 46407894
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacat 201  Q
    ||||||||||||||||||||||||||||||||    
T  46407863 gtagataagctcaaataagtcaatccaaacat 46407894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 46478771 - 46478818
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  46478771 tcacaaaacttacgttagtagatatgctcaaataagtcaatccaaaca 46478818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 2100126 - 2100092
Alignment:
Q  172 agataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||||||||||||||||||||| |||||    
T  2100126 agataagctcaaataagtcaatccaaacagaccct 2100092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 5331252 - 5331318
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacatt 76  Q
    ||||||| || ||||||| ||||||||| | |||||  | ||||||||| |||||||||||||||||    
T  5331252 tagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgtttttataagctacatt 5331318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 9832724 - 9832674
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||| ||||||||||||||  || ||||||||||||||||||||| |||||    
T  9832724 gtttgacaaaacttatgtcaataaataagctcaaataagtcaatctaaaca 9832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 21872253 - 21872211
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaacatac 203  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  21872253 cttatgtcagtagataagatcaaataagttaatccaaacatac 21872211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 29520590 - 29520524
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacatt 76  Q
    ||||||| || ||||||| ||||||||| | |||||  | ||||||||| |||||||||||||||||    
T  29520590 tagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgtttttataagctacatt 29520524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 46407617 - 46407655
Alignment:
Q  160 acttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||||||||||||||| || |||||||||    
T  46407617 acttatgtcggtagataagctcaaattagccaatccaaa 46407655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 5448550 - 5448583
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataag 188  Q
    |||||||||||||| |||||||||||||||||||    
T  5448550 acaaaacttatgtcagtagataagctcaaataag 5448583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 30443860 - 30443941
Alignment:
Q  18 gataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctg 99  Q
    |||||||| |||||||||||||||| || || ||||||| | ||||||||| ||| ||| || || |||  |||||||||||    
T  30443860 gataaaatgaagttaaattgcttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagctg 30443941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 35959563 - 35959478
Alignment:
Q  14 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctg 99  Q
    |||||||||||||||||||||||  |||| || || || |||||| ||| ||||||||| |||||| || ||   |||||||||||    
T  35959563 aaaggataaaataaagttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaatttttgaaaataagctg 35959478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 39980833 - 39980886
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||||||   ||||||||||||||| ||| ||||||||||| |||||    
T  39980833 tcacaaaacttatgctagtagataagctcaaacaagccaatccaaacagaccct 39980886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 47132397 - 47132467
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||| ||| ||||||||||  || |||||||||||  | | ||||||||||||||||||| |||||||||||    
T  47132397 ttttcataagttctccaaaacagtctcacaaaactt--gccagtagataagctcaaataagccaatccaaaca 47132467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 51929863 - 51929892
Alignment:
Q  171 tagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||||||||||||||||||||    
T  51929863 tagataagctcaaataagtcaatccaaaca 51929892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 20669471 - 20669499
Alignment:
Q  171 tagataagctcaaataagtcaatccaaac 199  Q
    |||||||||||||||||||||||||||||    
T  20669471 tagataagctcaaataagtcaatccaaac 20669499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 21367772 - 21367816
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||  ||||||||| |||||||||| |||||||||    
T  21367772 cacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 34235056 - 34235012
Alignment:
Q  156 caaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||||  |||||||||||| ||||||||||| ||||||    
T  34235056 caaaacttatgttagtagataagctcgaataagtcaatacaaaca 34235012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 42747777 - 42747701
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| ||||| ||||  || |||||| |||||||   |||||||| |||||||||||||| |||||||    
T  42747777 gttgttttcataagttctcaaaaacagtctcacaatacttatggaagtagataaactcaaataagtcaaaccaaaca 42747701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 45432909 - 45432865
Alignment:
Q  163 tatgtcggtagataagctcaaataagtcaatccaaacataccctt 207  Q
    |||||| ||||||||| | ||||||||||||||||||| ||||||    
T  45432909 tatgtcagtagataagttaaaataagtcaatccaaacagaccctt 45432865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 46778186 - 46778122
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataag 188  Q
    ||||||||| ||| |||||| ||| |||||||||||| ||||| |  || |||||||||||||||    
T  46778186 gttgttttcataagttctcccaaacggtttcacaaaatttatgccactaaataagctcaaataag 46778122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 50644250 - 50644174
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| |||||| |||  || ||||||||| |||||  |||||||||||||||||||||||||||||||    
T  50644250 gttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 14576760 - 14576695
Alignment:
Q  14 aaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 79  Q
    |||||||||||||||||||||||| |||| || || |||||| || ||||||||||||| ||||||    
T  14576760 aaaggataaaataaagttaaattgtttttgtatatgctataatttttttttataagctatattaga 14576695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 24334280 - 24334345
Alignment:
Q  134 taaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    |||||||||  |||| || |||||||||||||||| || ||||| |||||||||||||||||||||    
T  24334280 taaattctctcaaatagtctcacaaaacttatgtccgttgataaactcaaataagtcaatccaaac 24334345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 39976179 - 39976130
Alignment:
Q  150 gtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaac 199  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  39976179 gtttcacaaaacttatgtcagtagataatctcaaataagtcagtccaaac 39976130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 38116058 - 38116002
Alignment:
Q  138 ttctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatc 194  Q
    ||||||||||  || |||||||||||| ||| |||||||||||||||||||||||||    
T  38116058 ttctccaaaaccgtctcacaaaacttacgtcagtagataagctcaaataagtcaatc 38116002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 6292604 - 6292643
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  6292604 cttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 33204360 - 33204313
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  33204360 tcacaaaacttatgtcagtagataagctcaaataagtcgatctaaaca 33204313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 2295173 - 2295247
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||| ||| |||||| |||  || |||||||||||||| | ||||||||||||||||||| |||| ||||||    
T  2295173 tgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaaca 2295247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 2295280 - 2295342
Alignment:
Q  138 ttctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| |||| || ||| |||||||| ||| ||||||||||||||||||| |||||||||||    
T  2295280 ttctcccaaatagtctcagaaaacttaagtcagtagataagctcaaataagccaatccaaaca 2295342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 14385774 - 14385712
Alignment:
Q  138 ttctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||| || |||| ||||||||| | ||||||||||||||||||| |||||| ||||    
T  14385774 ttctccaaaatagtctcacgaaacttatgccagtagataagctcaaataagccaatccgaaca 14385712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 1432619 - 1432664
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||| |||||||||| |||||||||||||||| |||||||||    
T  1432619 tcacaaaatttatgtcggtggataagctcaaataagccaatccaaa 1432664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 36872806 - 36872879
Alignment:
Q  127 gttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||| ||||||||||||||  || || |||||||||||| | ||| |||||| ||||||| |||||||||||    
T  36872806 gttttcataaattctccaaaacagtctcgcaaaacttatgttgttagttaagcttaaataagccaatccaaaca 36872879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 41505784 - 41505825
Alignment:
Q  159 aacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  41505784 aacttatgtcagtagataagctcaaataagccaatccaaaca 41505825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 3234010 - 3233934
Alignment:
Q  124 gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||| ||| ||||||  ||  || |||||||||||| | |  ||||||||||||||||||||||||||||||    
T  3234010 gttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaaca 3233934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 13809957 - 13810145
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattagaaaaattacaaaaataagctgnnnnnnnctt 109  Q
    ||||||| |||||||||||||||||||| |||| || || |||||  || ||||||||| ||| |||||| || ||   ||||||||||        |||    
T  13809957 tagcaaaagataaaataaagttaaattgtttttgtatatgctatatattgtttttataaactatattagagaacttgtgaaaataagctaagaaaaactt 13810056  T
Q  110 ttgcgaattgtcat--gttgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatcca 196  Q
    |||  |||||||||    ||| ||| ||| ||||| ||||  || |||||||||||| ||| |||||||||| |||||||| |||||||    
T  13810057 ttgaaaattgtcataaactgtattcataagttctctaaaagagtctcacaaaacttacgtcagtagataagcacaaataagccaatcca 13810145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 7218031 - 7217992
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  7218031 ttatgccggtagataagcttaaataagtcaatccaaacat 7217992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 27146221 - 27146174
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||| |  ||||||||||||||| ||||||||||||||    
T  27146221 tcacaaaacttatgccaatagataagctcaaatcagtcaatccaaaca 27146174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 37617458 - 37617383
Alignment:
Q  126 tgttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 201  Q
    ||||||| |||||||||  |||  || |||||||||||| | |  ||||||| |||||||||||||||||||||||    
T  37617458 tgttttcataaattctcgcaaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatccaaacat 37617383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 3319895 - 3319865
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaaca 200  Q
    |||||||||||||||||||||||||||||||    
T  3319895 gtagataagctcaaataagtcaatccaaaca 3319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 5151990 - 5152032
Alignment:
Q  164 atgtcggtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||    
T  5151990 atgtcagtacataagctcaaataggtcaatccaaacataccct 5152032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 7028406 - 7028440
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataa 187  Q
    |||||||||||||||||| ||||||||||||||||    
T  7028406 tcacaaaacttatgtcggcagataagctcaaataa 7028440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 7069384 - 7069430
Alignment:
Q  154 cacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||||||||| ||  || ||||||||||||||||||||||||||||    
T  7069384 cacaaaacttacgttagttgataagctcaaataagtcaatccaaaca 7069430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 15784423 - 15784465
Alignment:
Q  155 acaaaacttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    |||||||||||||  ||||||||||||||||||||| ||||||    
T  15784423 acaaaacttatgttagtagataagctcaaataagtcgatccaa 15784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 28043589 - 28043659
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttc-tacatcctataagttctttttataagctacattaga 79  Q
    ||||||||| |||||||||||||| ||||||||| || || ||| |||||||||||| |||| | ||||||    
T  28043589 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattaga 28043659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 5886939 - 5886910
Alignment:
Q  172 agataagctcaaataagtcaatccaaacat 201  Q
    ||||||||||||||||||||||||||||||    
T  5886939 agataagctcaaataagtcaatccaaacat 5886910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 7107493 - 7107448
Alignment:
Q  138 ttctccaaaatggtttcacaaaacttatgtcggtagataagctcaa 183  Q
    |||||| |||| || |||||||||||||||| ||||||||||||||    
T  7107493 ttctcccaaatagtatcacaaaacttatgtcagtagataagctcaa 7107448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 33186225 - 33186286
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagct 71  Q
    ||||||||||||||| |||||||||||  | || || || ||||||||| ||||||||||||    
T  33186225 tagcaaaggataaaagaaagttaaatttttcttgtatatgctataagttgtttttataagct 33186286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 34303215 - 34303178
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  34303215 cttatgtcggtagataagctcaaacaagtcaattcaaa 34303178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 34952324 - 34952361
Alignment:
Q  171 tagataagctcaaataagtcaatccaaacataccctta 208  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  34952324 tagataagctcaaataagccaatccaaacagaccctta 34952361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 51929420 - 51929383
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  51929420 cttatgtcagtagataagctcaaaaaagtcaatccaaa 51929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 473242 - 473314
Alignment:
Q  128 ttttcgtaaattctccaaaatggtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||| ||| |||||| |||  |||||||| |||||||| | ||||||| ||||||||||| ||||| |||||    
T  473242 ttttcataagttctcccaaaatgtttcacagaacttatgccagtagataggctcaaataagccaatctaaaca 473314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 601163 - 601195
Alignment:
Q  172 agataagctcaaataagtcaatccaaacatacc 204  Q
    |||||||||||| ||||||||||||||||||||    
T  601163 agataagctcaagtaagtcaatccaaacatacc 601195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 3887575 - 3887543
Alignment:
Q  176 aagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||||||||||||||| |||||||    
T  3887575 aagctcaaataagtcaatccaaacagaccctta 3887543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 5157185 - 5157221
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  5157185 ttatgtccgtagataagttcaaataagtcaatccaaa 5157221  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 6102257 - 6102297
Alignment:
Q  153 tcacaaaacttatgtcggtagataagctcaaataagtcaat 193  Q
    |||||||| ||||| |||||||||| |||||||||||||||    
T  6102257 tcacaaaatttatgccggtagataaactcaaataagtcaat 6102297  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 9572219 - 9572187
Alignment:
Q  10 tagcaaaggataaaataaagttaaattgctttt 42  Q
    ||||||| |||||||||||||||||||||||||    
T  9572219 tagcaaaagataaaataaagttaaattgctttt 9572187  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 10199366 - 10199330
Alignment:
Q  161 cttatgtcggtagataagctcaaataagtcaatccaa 197  Q
    |||||||  ||||||||||||||||||||||||||||    
T  10199366 cttatgttagtagataagctcaaataagtcaatccaa 10199330  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 24460356 - 24460320
Alignment:
Q  164 atgtcggtagataagctcaaataagtcaatccaaaca 200  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  24460356 atgtcagtagataagttcaaataagtcaatccaaaca 24460320  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 26678863 - 26678927
Alignment:
Q  11 agcaaaggataaaataaagttaaattgcttttctacatcctataagttctttttataagctacat 75  Q
    |||||| ||||||||||||||| |||| || | || || ||||||||| | ||||||||||||||    
T  26678863 agcaaaagataaaataaagttacattgtttatgtaaatgctataagttgtatttataagctacat 26678927  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 26866434 - 26866470
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacataccct 206  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26866434 gtagataagctgaaataagtcaatccaaacagaccct 26866470  T

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Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 29793655 - 29793619
Alignment:
Q  162 ttatgtcggtagataagctcaaataagtcaatccaaa 198  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  29793655 ttatgtcagtagataagctcaaataagtcaatacaaa 29793619  T

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Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37517296 - 37517236
Alignment:
Q  19 ataaaataaagttaaattgcttttctacatcctataagttctttttataagctacattaga 79  Q
    ||||||||||||||||||| |||| || ||  |||||||| |||| |||||||| ||||||    
T  37517296 ataaaataaagttaaattgtttttgtatatattataagttattttaataagctatattaga 37517236  T

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Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 48748541 - 48748505
Alignment:
Q  173 gataagctcaaataagtcaatccaaacatacccttag 209  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  48748541 gataagctcaaataagtcaattcaaacatactcttag 48748505  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 21247 - 21213
Alignment:
Q  170 gtagataagctcaaataagtcaatccaaacatacc 204  Q
    ||||||||||||| |||||||||||||||||||||    
T  21247 gtagataagctcagataagtcaatccaaacatacc 21213  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 58995 - 59032
Alignment:
Q  171 tagataagctcaaataagtcaatccaaacataccctta 208  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  58995 tagataagctcatgtaagtcaatccaaacataccctta 59032  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6671 - 6704
Alignment:
Q  174 ataagctcaaataagtcaatccaaacataccctt 207  Q
    ||||||||||||||||||||||||||| ||||||    
T  6671 ataagctcaaataagtcaatccaaacaaaccctt 6704  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6669 - 6702
Alignment:
Q  174 ataagctcaaataagtcaatccaaacataccctt 207  Q
    ||||||||||||||||||||||||||| ||||||    
T  6669 ataagctcaaataagtcaatccaaacaaaccctt 6702  T

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