View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19724_low_12 (Length: 292)

Name: NF19724_low_12
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19724_low_12
NF19724_low_12
[»] chr1 (4 HSPs)
chr1 (1-286)||(3873903-3874185)
chr1 (1-232)||(3884483-3884713)
chr1 (240-284)||(28381534-28381578)
chr1 (240-288)||(25388357-25388405)
[»] chr4 (1 HSPs)
chr4 (240-284)||(17874467-17874511)
[»] chr3 (3 HSPs)
chr3 (239-286)||(6985471-6985518)
chr3 (240-286)||(8129520-8129566)
chr3 (109-205)||(48453465-48453561)
[»] chr5 (2 HSPs)
chr5 (246-284)||(28449291-28449329)
chr5 (240-284)||(35836780-35836824)
[»] chr8 (1 HSPs)
chr8 (240-284)||(39297998-39298042)
[»] chr2 (2 HSPs)
chr2 (240-284)||(13415254-13415298)
chr2 (240-286)||(27951943-27951989)
[»] scaffold0036 (1 HSPs)
scaffold0036 (240-286)||(45333-45379)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 3874185 - 3873903
Alignment:
Q  1 ggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagnnnnnnnggataagagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||    
T  3874185 ggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttttgtattggttttagtcatatctttatcagcttttttggataagagc 3874086  T
Q  101 ttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3874085 ttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaag 3873986  T
Q  201 catctctgttgtaatgtaagaaccttgcatgcggagtcatcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatt 286  Q
    |||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3873985 catct---ttgtaatgtaagaaccttgcatgcggagtcatcgagtccattgtcgtgtttaggcattgactaaccacttgttgtatt 3873903  T

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Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3884713 - 3884483
Alignment:
Q  1 ggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagnnnnnnnggataagagc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  3884713 ggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagcttttttagataagagc 3884614  T
Q  101 ttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884613 ttcacaaggtttgatcgtaattggattcatagagttggtg-ttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaag 3884515  T
Q  201 catctctgttgtaatgtaagaaccttgcatgc 232  Q
    ||||||||||||||||||||||||||||||||    
T  3884514 catctctgttgtaatgtaagaaccttgcatgc 3884483  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 28381578 - 28381534
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 284  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  28381578 tcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 28381534  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 25388405 - 25388357
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtattct 288  Q
    |||| ||| ||||||||||||| ||||| ||| ||||||||||||||||    
T  25388405 tcgagtcctttgtcgtgtttagacattggctagccacttgttgtattct 25388357  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 17874511 - 17874467
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 284  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  17874511 tcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 17874467  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 6985518 - 6985471
Alignment:
Q  239 atcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatt 286  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||    
T  6985518 atcgaatccattgtcgtgtttaggcattggataacaacttgttgtatt 6985471  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 8129566 - 8129520
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatt 286  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||    
T  8129566 tcgaatccattgtcgtgtttaggcattggttaacaacttgttgtatt 8129520  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 48453561 - 48453465
Alignment:
Q  109 gtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct 205  Q
    |||||||||| | ||||||||||||||| |||| || || || |||||| || | ||| ||| | |||| |||||| |||||||||| ||| |||||    
T  48453561 gtttgatcgttactggattcatagagtttgtggctcctcaggcggtatttttgtgattattactgttctttttcttattttgaagtggaaatcatct 48453465  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 28449291 - 28449329
Alignment:
Q  246 ccattgtcgtgtttaggcattgactaaccacttgttgta 284  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  28449291 ccattgtcgtgtttaggcattgactaaccactttttgta 28449329  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 35836824 - 35836780
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 284  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||    
T  35836824 tcgaatccattgtcgtgcttaggcattggttaaccacttgttgta 35836780  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 39297998 - 39298042
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 284  Q
    |||||| |||||||||||||||||||||  |||||||||||||||    
T  39297998 tcgaattcattgtcgtgtttaggcattggttaaccacttgttgta 39298042  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 13415298 - 13415254
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 284  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||    
T  13415298 tcgaatccattgtcgtgtttaggcattggttaacaacttgttgta 13415254  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 27951943 - 27951989
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatt 286  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||    
T  27951943 tcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatt 27951989  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 45333 - 45379
Alignment:
Q  240 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatt 286  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||    
T  45333 tcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatt 45379  T

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