View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19724_low_16 (Length: 248)
Name: NF19724_low_16
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 38514600 - 38514809
Alignment:
| Q |
25 |
aaatgttaatatat-attgttaatagtatattattttttctttgttacgatttgaaccacaattttaacataagctttttaaatttcttaactcaaatca |
123 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
38514600 |
aaatgttaatatattattgttaatagtatattattttttctttattacgatttgaaccacaactttaacacaagctttttaaatttctcaactcaaatca |
38514699 |
T |
|
| Q |
124 |
attaaactac--agtcttccaatgttggagaatattgtggaatactatgttttaagtagattagttnnnnnnnngtacaaatgaatttatttataaaaaa |
221 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38514700 |
attaaactacataaccttccaatgttggagaatattgtggaatactatgttttaaggagattagtt-aaaaaaagtacaaatgaatttatttataaaaaa |
38514798 |
T |
|
| Q |
222 |
tagttaaatat |
232 |
Q |
| |
|
||||||||||| |
|
|
| T |
38514799 |
tagttaaatat |
38514809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University